Julia framework for spatial ecology - data types and utilities
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Apr 19, 2024 - Julia
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macroecology
Here are 26 public repositories matching this topic...
population and community dynamics on spatial graphs, in julia. (formerly EcoDynamics.jl)
simulation julia dynamics ecology community-ecology landscape-ecology macroecology spatial-ecology ecojulia
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Dec 13, 2024 - Julia
Spatial analysis and simulation of ecological communities
simulation species biodiversity rarefaction macroecology species-abundance-distributions point-pattern-analysis
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Dec 5, 2024 - R
Functions and types to access GBIF data from Julia
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Dec 11, 2022 - Julia
An R package to generate species range maps based on ecoregions and a user-friendly GBIF wrapper
taxonomy synonyms r-package filtering flags gbif-api large-scale range-maps macroecology iucn-red-list species-distribution ecoregions environmental-classification accepted-names hard-limit occurrence-records species-observations
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Dec 18, 2024 - R
Repository for the manuscript: 'Impacts of past abrupt land change on local biodiversity globally'
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Oct 20, 2019 - R
Processing NEON soil microbe marker gene sequence data into ASV tables.
bioinformatics neon r-package marker-genes macroecology biogeography dada2 soil-microbiome neonmicrobe
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Apr 9, 2024 - R
Spatial patterns in biodiversity change
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Sep 2, 2017 - R
Data, code & figures used to assess global patterns of potential thermal niche filling
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Sep 21, 2023 - R
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Dec 6, 2024 - R
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Jan 17, 2023 - CSS
This repository contains the R code and the associated data files that were used to execute the entire workflow for the manuscript "Habitat and not topographic heterogeneity constrains the range sizes of African mammals" (published in the Journal of Biogeography)
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Jul 18, 2024 - R
Paper - Best practices for building and curating databases for comparative analyses
review database open-science biomechanics commentary meta-analysis macroecology ecophysiology macroevolution macrophysiology comparative-physiology
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Mar 15, 2022 - R
Analysis of the Allen Coral Atlas database on shallow-water tropical reefs worldwide
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Oct 18, 2024 - Python
data and R code to reproduce the analysis and plots presented in the manuscript: "Macrophenological dynamics from citizen science plant occurrence data"
machine-learning binary-data data-driven synchronisation biodiversity citizen-science flora jaccard-distance macroecology isomap phenology occurrence spatio-temporal-dynamics nonlinear-dimension-reduction plant-phenology group-behaviour flora-incognita
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Jun 7, 2024 - R
My personal repository
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Jul 23, 2024
Open access repository for (some) data-sets, reproducible analyses, conference slides and manuscript for a publication based on my BSc Hons project (in press in Journal of Biogeography).
science r biology academic open-science rstats manuscript ecology biodiversity botany macroecology biogeography science-research ecology-modelling species-richness
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May 1, 2022 - R
Ecologist interested in the different facets of diversity (taxonomic, functional, phylogenetic) and their link with community structure, environmental variability and ecosystem services. Strong experience in statistical modeling, multivariate analysis and large database mining in R.
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Aug 28, 2024
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