PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.

Bayesian inference of trait evolution under a “fossilized” Brownian motion.

This repository contains the R code, data, and figures for the paper Vidal-García, M., O'Hanlon, J.C., Svenson, G.J, Umbers, K.D.L. (in press) The evolution of defensive displays in praying mantises. Proceedings of the Royal Society B

Data and analyses used in Moon & Stubbs, Communications Biology doi:10.1038/s42003-020-0779-6

paleobuddy: an R package for simulating diversification dynamics, fossil records and phylogenies in R.

Infer phylogeny parameters with Deep Learning.

R codes for simulating and detecting punctuated evolution in any clades, from dinosaurs to viruses

Code and data to reproduce all analyses and figures in Hill et al 2023

R scripts to explore global patterns of diversificatio and species richness of current and present-natural mammals

Paper - A novel function of banded stripes to prevent cannibalism in snake-eating snakes

Supplementary code and data for "The paradox of predictability"

Analysing patterns of phenotypic adaptation across timescales and lineages

Analogy between the protracted birth death model and the classical birth death model

Paper - Best practices for building and curating databases for comparative analyses

Macroevolutionary analyses of the Monodoreae tribe (Annonaceae) 🧬🌳🌍

Data, code & figures used to assess global patterns of potential thermal niche filling

Code and Figures for Souza Ferreira et al. (in prep)

R scripts for the Royal Society Open Science crocodylomorph sinus analysis paper (https://royalsocietypublishing.org/doi/10.1098/rsos.241272)