Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Rapid Profiling and Deconvolution Tool for Metagenomes

Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes

Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins

Lightweight bioinformatics pipeline for microbial genome recovery

A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees

Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analysis and c) MAG assembly and annotation using a broad set of ready to use and included public databases and annotators

Pan-genomics of metagenome-assembled genomes suffers from fragmentation and incompleteness

Human oral metagenome-assembly-genome

The Metagenome-Assembled Genome Inventory for Children (MAGIC)

clutering of MAGs (metagenome assembled genomes) into MGS (metagenomic species)

metacoverage estimation and tags generation from diamond aligner

MetaSBT public databases