A simple R package to convert MetaPhlAn 4 output profiles to a phyloseq object.
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Updated
Oct 8, 2025 - R
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metaphlan4
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Integrated 16S rRNA and shotgun metagenomic analysis of sourdough-based kvass fermentation. Explores how dietary fibre addition shapes microbial composition and metabolic potential using QIIME2, MetaPhlAn4, Kraken2, Kaiju, HUMAnN3, and DRAM2.0. Includes complete pipelines, metadata, and reproducible workflows implemented on HPC and local env
shell bash bioinformatics r nextflow shotgun hpc metagenomics dram kraken fermentation microbiome-analysis kaiju qiime2 bracken msc-dissertation humann3 metaphlan4 microbiome-metabolism kvass
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Updated
Oct 29, 2025 - Shell
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