A simulations software (C++ with CUDA) for modeling assembly and disassemby of microtubules - main chemotherapeutic target in the cell

Automated line profiles along biological structures

Quantum Cognitive Synthesis Theory (QCST) is a theoretical framework exploring the integration of quantum mechanics, cognitive science, and AI. It proposes that consciousness might be simulated through quantum-like processes in microtubules, with implementations across various programming languages and using MySQL for managing learning experiences.

Consciousness and Quantum Theory: Stuart Hameroff, Roger Penrose

This project simulates the quantum coherence of a Gaussian wave packet in a microtubule-inspired system using Python. It models the behavior of a wave packet in a potential-free environment and visualizes the time evolution of the probability density.

A tool to simulate microtubule dynamics in the phragmoplast

Analysis scripts for the manuscript "Spindle checkpoint silencing at kinetochores at submaximal microtubule occupancy" by Etemad et al. "

Simulation code and data for the paper "Multivalent interactions facilitate motor-dependent protein accumulation at growing microtubule plus ends"

An R Package for the functions generate_filaments() and crescent_kf(), for use in SMLM (DNA-PAINT) image segmentation of filamentous structures, such as microtubules.

Pipeline for on-the-fly subtraction of filaments from cryo-EM micrographs.

Quantum Cognitive Synthesis Theory (QCST) is a theoretical framework exploring the integration of quantum mechanics, cognitive science, and AI. It proposes that consciousness might be simulated through quantum-like processes in microtubules, with implementations across various programming languages and using MySQL for managing learning experiences.