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nanopore-data

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RawHash

CMU-SAFARI / RawHash

RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440).

bioinformatics nanopore seeding segmentation event-detection genome-analysis hash-tables contamination read-mapping relative-abundances nanopore-sequencing nanopore-analysis-pipeline nanopore-reads nanopore-data nanopore-minion raw-signal rawhash raw-nanopore-signal-analysis

Updated Dec 9, 2024
C

replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data

workflow bioinformatics nanopore basecalling artic sars-cov-2 nanopore-data

Updated Dec 20, 2024
Nextflow

Nazeeefa / NanoSwe

NanoSwe: Analysing nanopore (PromethION) data of Swedish genomes

variant-calling nanopore-sequencing human-genomes long-read-sequencing nanopore-data

Updated Mar 23, 2021
R

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