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neuron-segmentation

Here are 8 public repositories matching this topic...

ilastik / nature_methods_multicut_pipeline

connectomics neuron-segmentation

Updated Mar 31, 2021
Python

celisun / Deep_learning_automated__neuron_segmentation

Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org

machine-learning deep-learning segmentation residual-networks research-paper neuron-segmentation state-of-the-art

Updated Mar 10, 2018
Python

markschoene / MeLeCoLe

Metric learning and contrastive learning for neuron segmentation

deep-learning segmentation connectomics neuron-segmentation

Updated Oct 13, 2022
Python

AllenNeuralDynamics / segmentation-skeleton-metrics

A Python package for evaluating a predicted segmentation of neural arbors by using skeleton-based metrics. This tool detects topological mistakes (i.e. splits and merges) in a predicted segmentation by comparing it to a set of ground truth skeletons.

python evaluation-metrics neuron-segmentation

Updated Oct 30, 2024
Python

Jesse-McDonald / CASTER

Computer Assisted Segmentation Tool Environment Revisit

bioinformatics image-segmentation image-analysis neuron-segmentation cell-segmentation retinal-vessel-segmentation scanning-electron-microscope retinal-layer-segmentation scanning-microscopy

Updated Sep 23, 2020
Processing

dsp-uga / NeuronSegmentation-TeamWright

Neuron Segmentaion, Python, Keras, Neural-networks, NMF, Binary Classification, Blob detection

python keras-neural-networks binary-classification nmf neuron-segmentation

Updated Mar 9, 2018
Python

Leandroscholz / swc_metrics

set of filament tracing metric computation utilities (for .swc files)

metrics swc neuron-segmentation neuron-morphology

Updated Jun 10, 2019
Python

seung-lab / emirt

EM Image Reconstruction Tools using Python

python image-processing neuron-segmentation connectome

Updated May 13, 2019
Python

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