RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.
Access Orbitrap data in R lang using C# mono assembly - bioconductor package
QC dashboard for LC-MS proteomic equipment using R and shinydashboard
QC dashboard for LC-MS proteomic equipment using python and bokeh
Script for quantification of glucosaminoglycans (GAGs) based on Proteome Discoverer output, with web-interface powered by Bokeh
QC scripts for LC-MS proteomic equipment based on Proteome Discoverer 2.4 output
git mirror of the bioconductor version
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