Meiotic Recombination Detection Pipeline with PacBio HiFi sequencing reads

Adapter+Barcode trimming from Pacbio HiFi reads

Variant calling pipeline for Pacbio Hifi reads

Scripts for de-novo genome assembly, assembly polishing, QC and post-assemble analyses of HiFi whole genome sequence data and downstream pangenomics analyses to identify structural variants

pacbiohifi view using awk

pacbiohifi read analyzer using recursion

polyATGC pacbio/oxford nanopore estimator

pacbio/oxford nanopore long reads repeat coverage estimation

codegetter for illumina, pacbio and oxford long read and short reads

go driven pacbiohifi sam sort for browser requests and caching

a streamlit application for graphical analyisis of pacbiohifi reads

awk utilites for anlyzing pacbiohifi genomes and reads

profiling pacbiokmers and filtering pacbio kmers

streaming visualization of pacbiohifi reads

trimmomatic for long reads

multipattern trimmomatic for long reads

Nextflow pipeline to assemble genomes from long reads.