Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
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Updated
Oct 9, 2024 - Python
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pangenome-pipeline
Here are 6 public repositories matching this topic...
A toolkit for prokaryotic comparative genomics
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Updated
Nov 15, 2024 - Python
Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.
bioinformatics
annotation
clustering
biology
gene-families
bioinformatics-analysis
proteome-clustering
downstream-analysis
orthomcl
pangenome
singletons
plasmodium
duplicates-removal
gene-family
binary-matrix
accessory-genes
coregenome
pangenome-inference
pangenome-pipeline
count-matrix
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Updated
Feb 21, 2022 - Python
Leveraging WES short reads for PAN-EXOME creation and analysis.
ngs
exome-pipeline
exome
ngs-analysis
exome-sequencing
ngs-pipeline
pangenome
pangenomic-analysis
pangenome-pipeline
pangenome-graph
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Updated
Nov 6, 2024 - WDL
single copy pangenome analysis from alignments to phylogenomics
bioinformatics
genome-analysis
bioinformatics-analysis
pangenome
pangenome-pipeline
genome-analysis-annotation
genome-pangenome
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Updated
Sep 12, 2024 - Shell
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