Functions for working with NCBI's Pathogen Detection data
Sequence Matching fOr REpiratory Diseases, SMORE'D, is a command-line sequence classification tool tailored to meet the needs of the Undiagnosed Respiratory Disease Outbreak (URDO) branch at CDC. SMORE'D is a k-mer based classification tool capable of rapidly classifying read sequences generated by multi-pathogen detection platforms.
ZoonoticMap: A comprehensive genomic analysis tool for identifying pathogenicity, resistance genes, and mobile elements, integrating BLAST for precise scoring and delivering actionable insights for zoonotic risk assessment and advanced genomic research.
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