🇨🇭🦠 Service for pathogens and threats identification in hospital environments - SOPHiA Genetics

Code repository for the manuscript: Extensive transmission and variation in a functional receptor for praziquantel resistance in endemic Schistosoma mansoni

Model to simulate the population dynamics of four Aedes mosquito species.

Multiplexed SSR marker analysis of Diplocarpon coronariae reveals clonality within samples from Middle Europe and genetic distance from Asian and North American isolates

galaxy wf detect pathogens in MinION data

Untangling the pea root rot complex leads to the identification of microbial markers for plant health

Systematic assessment of the impacts of climate change on human pathogenic diseases

MIP_ORACLE: Identifies unique target regions with diagnostic significance in pathogens.

Hugo pathogens portal theme

Code repository for the publication: "Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration"

PathoPore - Longer Sequences and NextFlow Faster Analysis

Tracking the movement of cereal blast caused by Pyricularia

Course on bioinformatics (linux intro + DNA sequencing pipeline) for the Fighting Malaria Across Borders training programme by the Institute of Tropical Medicine and VLIR-UOS (Belgium)

Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

PathoGFAIR: Galaxy FAIR Workflows for Pathogen Detection and Samples Comparison

This is APRANK, an Antigenic Protein and Peptide Ranker.

Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.

Materials and presentation for the 2023 ISB Microbiome course.