ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

Scripts and data regarding Vampyrellida genomics.

Python framework for interpretable protein prediction

Prediction of Binding Residues in Disordered Regions Based on Protein Embeddings; TUM Master Praktikum Bioinformatics 2022 (Project #3) and Master's Thesis

Transmembrane proteins predicted through Language Model embeddings

Protein Secondary Structure predictor using Convolutional Neural Networks

Get protein embeddings from protein sequences

HNOXPred: a web tool for the prediction of gas sensing H-NOX proteins from amino acid sequence

Predicting phosphorylation sites from sequence and structure via a GNN

Utilizes Markov Models to predict protein coding genes

cTPnet Package

Transmembrane proteins predicted through Language Model embeddings

Code and results for the practical exercises of the course "Protein Prediction 2" in Winter 21/22 at TUM Authors: Adrian Henkel, Finn Gaida, Lis Arend, Sebastian Dötsch, Shlomo Libo Feigin

Repository containing bio_embeddings resources

Repository for the software engineering project during the second year of the Master of Bioinformatics at the University of Bordeaux.