Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
QUT Capstone Project featuring a vanilla javascript project designed to display genome information from a PostgreSQL database in a user friendly way. Allows genomes to be tagged in groups and generates simple aggregate statistics.
SCAPE - StaphyloCoccus Aureus Pangenome Exploration
Raw data and code for the Genomic Analysis of Singles and Pools (GASP) project - https://doi.org/10.1099/mgen.0.001111
Curve Growth modeling-IPASS project
This repository introduces the codes applied to the nasal microbial community of the latest available curated GEMs of D. pigrum and S. aureus.
A bioinformatics pipeline for RNA-Seq analysis of Staphylococcus aureus persisters under antibiotic stress, based on Peyrusson et al. (2020). Built with Nextflow and Docker for reproducibility.
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