Quickly search, compare, and analyze genomic and metagenomic data sets.
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Updated
Oct 21, 2024 - Python
Quickly search, compare, and analyze genomic and metagenomic data sets.
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform specie level taxonomic assignments and functional analysis.
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
Parallelised and automated construction of metagenomic classifier databases of different tools
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
TAXnomic Profile Aggregation and STAndardisation
Fast and space-efficient taxonomic classification of long reads
Metabarcoding analysis pipeline, using DADA2 and qiime2
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
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