Workflow for Simulation and Automatic Semantic Segmentation of Electron Microscopy Images
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Jan 15, 2025 - Jupyter Notebook
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Here are 43 public repositories matching this topic...
TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.
processing template-matching pipeline structural-biology cluster parallel parallel-computing alignment tomography cryo-em reconstruction automated em et cluster-computing tem cryoem cryo-et particle-picking cryoet
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Jun 29, 2025 - MATLAB
A fully-featured package for multislice electron ptychography
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Sep 26, 2025 - Python
Functions for analysis of high resolution electron microscopy and spectroscopy data.
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May 9, 2022 - Python
S/TEM Automated Nanoparticle Analysis
machine-learning deep-learning sam electron-microscopy stem materials-science semantic-segmentation tem yolov8 nanoparticle-analysis
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Mar 14, 2025 - Python
A 3D finite-difference transient electromagnetic modeling open-source software. Available in Matlab/Fortran/EXE versions. Supports wire/loop sources, and ground/airborne/marine/tunnel/borehole scenarios.
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May 23, 2025 - Fortran
Control and Automation of Transmission Electron Microscopes
python automation controller scripting ued tem transmission-electron-microscopy microcrystal-electron-diffraction
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Aug 12, 2022 - Python
This repository holds Python scripts used for day-to-day data analysis required by my graduate degree.
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Apr 4, 2020 - Python
A MATLAB codebase to analyze TEM images of soot, which includes new methods associated with this project and a compilation of other pre-existing methods into a single package.
image-processing soot tem particle-size-distribution aggregates transmission-electron-microscopy tem-images aerosols particle-diameter
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Sep 19, 2024 - MATLAB
Python wrapper for the scripting interface of Thermo Fisher Scientific and FEI microscopes.
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Apr 4, 2025 - Python
A modern and responsive Front-end template for NFT marketplaces, featuring 3D animations, smooth interactions, and a sleek design. Perfect for developers looking to build an eye-catching NFT platform with ease. 🚀
react javascript css html template website threejs blockchain cryptocurrency web3 responsive-design website-template 3d-animation nft tem modern-ui nft-marketplace
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Mar 23, 2025 - HTML
Jython script templates for DTSA-II for simulating energy-dispersive x-ray spectroscopy (EDS)
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Oct 15, 2024 - Python
A template repository used for building cli
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Oct 8, 2019 - Python
A plugin for the Xicam scientific data visualization and analysis software. Developed by the National Center for Electron Microscopy (NCEM).
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Apr 12, 2022 - Python
A Computer Vision-Based Tool for Automatic Segmentation and Size Analysis of Nanoparticles in Scanning Electron Microscope (SEM) and Transmission Electron Microscope (TEM) Images
computer-vision deep-learning yolo data-analysis object-detection image-segmentation electron-microscopy sem tem scientific-research nanotechnology microscopy-images particle-analysis detectron2 materials-characterization scanning-electron-microscopy sem-image-analysis transmission-electron-microscope
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Sep 26, 2025 - Python
Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images
deep-learning tensorflow keras circle-detection segmentation electron-microscopy tem instance-segmentation radon-transform unet-keras extracellular-vesicles exosome unet-segmentation residual-unet
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Nov 10, 2023 - Jupyter Notebook
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