PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
A python package for synthetic vascular generation and simulation
Grasshopper algorithm for FRC-inspired scaffold generation.
Deprecated version of my parametric .gcode file generator for bioprinting research application written in C. Has since been revamped in Java.
The living book of Marshall
A computational pipeline for analyzing tissue regeneration in volumetric muscle loss treatment studies. Enables automated processing of histological and immunohistochemical whole slide images to quantify tissue components, inflammatory responses, and regenerative markers. Provides standardized analysis of spatial tissue heterogeneity.
Landing Page - BioDimension
Motion Analysis of Ring-Shaped tissues - code from Seguret et al. 2024 eLife
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