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wgmlst

Here are 5 public repositories matching this topic...

B-UMMI / chewBBACA

BSR-Based Allele Calling Algorithm

bioinformatics genomics mlst bacteria cgmlst outbreak-detection wgmlst bacterial-genome-analysis allele-calling bacterial-typing

Updated Nov 5, 2024
HTML

tseemann / cgmlst-dists

🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables

cgmlst distance-matrix wgmlst

Updated Sep 26, 2023
C

BU-ISCIII / taranis

cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

sequencing mlst cgmlst outbreak-detection bacterial-genomes wgmlst outbreak-data-analysis

Updated May 2, 2024
Python

cenesis / cano-wgMLST

A Platform for Epidemiological Investigation and Comparative Genomic Analysis

bioinformatics research next-generation-sequencing feature-selection bioinformatics-pipeline molecular-typing wgmlst epidemiological-investigation comparative-genomic-analysis

Updated Jul 29, 2019
Perl

tripitakit / mlst2dist

mlst2dist.py computes a distance matrix from a chewBBACA MLST alleles table, using Hamming Distance modified with correction for missing data

genomics mlst distance-calculation hamming-distance cgmlst distance-matrix wgmlst dissimilarity-matrix chewbbaca

Updated Apr 19, 2022
Python

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