Bayesian Segmentation of Spatial Transcriptomics Data
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Dec 10, 2024 - Julia
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xenium
Here are 8 public repositories matching this topic...
a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex imaging datasets, leveraging a unique approach based on graph neural networks (GNNs).
ai graphs segmentation cell-segmentation oncology single-cell-analysis graph-neural-networks spatial-transcriptomics spatial-omics xenium molecule-graphs
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Jan 13, 2025 - Python
A Julia package for single cell and spatial data analysis
bioinformatics data-viz scrna-seq starmap julia-package single-cell-omics spatial-transcriptomics scatac-seq merfish visium seqfish xenium cartana slideseq
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Dec 16, 2024 - Julia
Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue"
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Nov 30, 2023 - Jupyter Notebook
R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients
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Nov 13, 2024 - R
A Julia package for single cell and spatial data analysis
data-viz julia-package single-cell-omics scrna-seq-analysis spatial-transcriptomics visium xenium cartana
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Sep 4, 2024 - Julia
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May 30, 2024 - R
Tool for quick and standardized annotation of single cell transcriptomics data
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Nov 5, 2024 - Python
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