Skip to content

Commit

Permalink
edit README
Browse files Browse the repository at this point in the history
  • Loading branch information
Thu-Hien To authored and Thu-Hien To committed Mar 10, 2020
1 parent b90ee72 commit 402556f
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -139,7 +139,7 @@ Variance is used to penalize long branch lengths. The variance formula of each b

`./lsd2 -i rootedtree_file -d date_file -c -r l`

- You want to calculate confidence intervals from 100 simulated trees. The sequence length used to build your tree was 1000, and you'd like to apply a lognormal relaxed clock on the simulated branch lengths of standard deviation 0.4.
- You want to calculate confidence intervals from 100 simulated trees. The sequence length used to build your tree was 1000, and you'd like to apply a lognormal relaxed clock of standard deviation 0.4 to the simulated branch lengths.

`./lsd2 -i rootedtree_file -d date_file -c -r l -f 100 -s 1000 -q 0.4`

Expand Down

0 comments on commit 402556f

Please sign in to comment.