-
FASTA header ID is used as the reference name by default, instead of the name of the FASTA file.
The header ID is everything before a space character in the FASTA header ("EPI_ISL_402124" for EPI_ISL_402124.fasta). This will change the names and content of several output files, including- Default name of the
.olvr
file - Output file names of
olivar tiling
(e.g., EPI_ISL_402124.html) - Columns in olivar-design.csv and olivar-design.primer.bed, as well as outputs of
olivar validate
(e.g., olivar-val_pool-1.csv)
- Default name of the
-
Fixed BED/ARTIC output format (see issue #17)