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Update README.md
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trislett authored Nov 14, 2019
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Expand Up @@ -7,7 +7,7 @@ There are essentially two steps: (a) Inter-modality, intrasubject registration o

The software requires tight brain extractions for the T1w images. Brain extraction using [antsBrainExtraction.sh](https://github.com/ANTsX/ANTs/blob/master/Scripts/antsBrainExtraction.sh) and based on recommended settings from [fMRIprep](https://fmriprep.readthedocs.io/en/latest/workflows.html#brain-extraction-brain-tissue-segmentation-and-spatial-normalization).

It is also possible to use ants_tbss (--othermodality) for registration of other modalities such as fMRI (e.g., betted example_func.nii.gz) to B0, and use the previously calculated transformations to native space and standard space.
It is also possible to use ants_tbss (--othermodality) for registration of other modalities such as fMRI (e.g., betted example_func.nii.gz) to B0-in-native-T1w, and use the previously calculated transformations to native space and standard space.

[voxel_slices](bin/voxel_slices) is also installed for fast production quality controls images.

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