[CI] Check reqs (mne-tools#139)

* Check reqs
* Copy paste from mne

---------

Signed-off-by: Adam Li <adam2392@gmail.com>
Co-authored-by: Daniel McCloy <dan@mccloy.info>

.circleci/config.yml

@@ -33,7 +33,9 @@ jobs:
             name: Set BASH_ENV
             command: |
               set -e
-              ./tools/setup_xvfb.sh
+              curl https://raw.githubusercontent.com/mne-tools/mne-python/main/tools/setup_xvfb.sh -o setup_xvfb.sh
+              chmod +x setup_xvfb.sh
+              ./setup_xvfb.sh
               sudo apt install -qq graphviz optipng python3.10-venv python3-venv libxft2 ffmpeg
               python3.10 -m venv ~/python_env
               echo "set -e" >> $BASH_ENV
@@ -70,22 +72,24 @@ jobs:
               - pip-cache
         - restore_cache:
             keys:
-              - user-install-bin-cachev1
+              - user-install-bin-cache-310
 
         - run:
             name: Get Python running and install dependencies
             command: |
-              ./tools/circleci_dependencies.sh
+              curl https://raw.githubusercontent.com/mne-tools/mne-python/main/tools/circleci_dependencies.sh -o circleci_dependencies.sh
+              chmod +x circleci_dependencies.sh
+              ./circleci_dependencies.sh
 
         - save_cache:
             key: pip-cache
             paths:
               - ~/.cache/pip
 
         - save_cache:
-            key: user-install-bin-cachev1
+            key: user-install-bin-cache-310
             paths:
-              - ~/.local/lib/python3.8/site-packages
+              - ~/.local/lib/python3.10/site-packages
               - ~/.local/bin
 
         # Look at what we have and fail early if there is some library conflict

.github/workflows/linux_conda.yml

@@ -28,7 +28,10 @@ jobs:
       PYTHON_VERSION: '3.9'
     steps:
       - uses: actions/checkout@v2
-      - run: ./tools/setup_xvfb.sh
+      - run: |
+          curl https://raw.githubusercontent.com/mne-tools/mne-python/main/tools/setup_xvfb.sh -o setup_xvfb.sh
+          chmod +x setup_xvfb.sh
+          ./setup_xvfb.sh
         name: 'Setup xvfb'
       - uses: conda-incubator/setup-miniconda@v2
         with:
@@ -39,7 +42,9 @@ jobs:
       - shell: bash -el {0}
         run: |
           conda activate mne
-          source tools/get_minimal_commands.sh
+          curl https://raw.githubusercontent.com/mne-tools/mne-python/main/tools/get_minimal_commands.sh -o get_minimal_commands.sh
+          chmod +x get_minimal_commands.sh
+          source ./get_minimal_commands.sh
           pip install -r requirements_testing.txt
         name: 'Install dependencies'
 

.github/workflows/unit_tests.yml

@@ -46,7 +46,10 @@ jobs:
         # with:
         #   path: ~/.cache/pip
         #   key: ${{ hashFiles('setup.py') }}-${{ hashFiles('test-requirements.txt') }}-${{ hashFiles('requirements.txt') }}
-      - run: ./tools/setup_xvfb.sh
+      - run: |
+          curl https://raw.githubusercontent.com/mne-tools/mne-python/main/tools/setup_xvfb.sh -o setup_xvfb.sh
+          chmod +x setup_xvfb.sh
+          ./setup_xvfb.sh
         name: 'Setup xvfb'
         if: runner.os == 'Linux'
       - name: Set up Python ${{ matrix.python-version }}
@@ -132,7 +135,10 @@ jobs:
         #   path: ~/.cache/pip
         #   key: ${{ hashFiles('setup.py') }}-${{ hashFiles('test-requirements.txt') }}-${{ hashFiles('requirements.txt') }}
 
-      - run: ./tools/setup_xvfb.sh
+      - run: |
+          curl https://raw.githubusercontent.com/mne-tools/mne-python/main/tools/setup_xvfb.sh -o setup_xvfb.sh
+          chmod +x setup_xvfb.sh
+          ./setup_xvfb.sh
         name: 'Setup xvfb'
         if: runner.os == 'Linux'
 

environment.yml

@@ -17,8 +17,9 @@ dependencies:
 - statsmodels
 - joblib
 - vtk>=9.0.1
-- pyvista>=0.32
+- pyvista>=0.32,!=0.35.2,!=0.38.0,!=0.38.1,!=0.38.2,!=0.38.3,!=0.38.4,!=0.38.5
 - pyvistaqt>=0.4
-- pyqt!=5.15.3
-- mne>=1.0
+- qtpy
+- pyqt!=5.15.3,!=5.15.4
+- mne>=1.3
 - h5netcdf

requirements.txt

@@ -7,7 +7,7 @@ h5netcdf
 tqdm
 matplotlib
 qtpy
-PySide6!=6.3.0,!=6.4.0,!=6.4.0.1
+PySide6!=6.3.0,!=6.4.0,!=6.4.0.1,!=6.5.0  # incompat with Matplotlib 3.6.1 and qtpy
 sip
 pyvista>=0.30
 pyvistaqt>=0.4

requirements_doc.txt

@@ -7,10 +7,10 @@ sphinx-issues
 numpydoc
 nibabel
 nilearn
-https://github.com/pydata/pydata-sphinx-theme/archive/cef3e724e15852fc2a84bee256c457c9497834b8.zip
+pydata_sphinx_theme==0.13.1
 typing-extensions
 sphinx-autodoc-typehints
 sphinxcontrib-bibtex
-https://github.com/mne-tools/mne-bids/archive/main.zip
+git+https://github.com/mne-tools/mne-bids@main
 pooch
 mne-qt-browser

requirements_testing.txt

@@ -11,4 +11,4 @@ twine
 wheel
 statsmodels
 scikit-learn
-https://github.com/mne-tools/mne-bids/archive/main.zip
+git+https://github.com/mne-tools/mne-bids@main

setup.py

@@ -49,7 +49,10 @@
         'sip',
         'pyvista',
         'pyvistaqt',
-        'pyqt5'],
+        'pyqt5',
+        'h5netcdf',
+        'pyside6',
+    ],
     'tests': [
         'pytest',
         'pytest-cov',