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1. tskit tskit Public

   Population-scale Ancestral Recombination Graph (ARG) library

   Python 162 75

2. msprime msprime Public

   Simulate genealogical trees and genomic sequence data using population genetic models

   Python 187 87

3. tsinfer tsinfer Public

   Infer a tree sequence from genetic variation data.

   C 58 14

4. tsdate tsdate Public

   Infer the age of ancestral nodes in a tree sequence.

   Python 20 10

5. tutorials tutorials Public

   A set of tutorials for msprime and tskit.

   Jupyter Notebook 20 15

6. tszip tszip Public

   Gzip-like compression for tskit tree sequences

   Python 5 7