updating consolidation type for default-on-demand nodepool

uc-cdis · Sep 19, 2024 · e65d998 · e65d998
1 parent ad74e08
commit e65d998
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Showing 32 changed files with 1 addition and 63 deletions.
diff --git a/helm/ambassador/README.md b/helm/ambassador/README.md
@@ -60,5 +60,3 @@ A Helm chart for deploying ambassador for gen3
 | tolerations | list | `[]` | Tolerations to use for the deployment. |
 | userNamespace | string | `"jupyter-pods"` | Namespace to use for user resources. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/arborist/README.md b/helm/arborist/README.md
@@ -105,5 +105,3 @@ A Helm chart for gen3 arborist
 | volumeMounts | list | `[]` | Volume mounts to attach to the container |
 | volumes | list | `[]` | Volumes to attach to the pod |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/argo-wrapper/README.md b/helm/argo-wrapper/README.md
@@ -64,5 +64,3 @@ A Helm chart for gen3 Argo Wrapper Service
 | volumeMounts | list | `[{"mountPath":"/argo.json","name":"argo-config","readOnly":true,"subPath":"argo.json"}]` | Volumes to mount to the pod. |
 | volumes | list | `[{"configMap":{"items":[{"key":"argo.json","path":"argo.json"}],"name":"manifest-argo"},"name":"argo-config"}]` | Volumes to attach to the pod. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/audit/README.md b/helm/audit/README.md
@@ -123,5 +123,3 @@ A Helm chart for Kubernetes
 | volumeMounts | list | `[]` | Volumes to mount to the container. |
 | volumes | list | `[]` | Volumes to attach to the container. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/aws-es-proxy/README.md b/helm/aws-es-proxy/README.md
@@ -67,5 +67,3 @@ A Helm chart for AWS ES Proxy Service for gen3
 | volumeMounts | list | `[{"mountPath":"/root/.aws","name":"credentials","readOnly":true}]` | Volumes to mount to the pod. |
 | volumes | list | `nil` | Volumes to attach to the pod |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/common/README.md b/helm/common/README.md
@@ -29,5 +29,3 @@ A Helm chart for provisioning databases in gen3
 | global.revproxyArn | string | `"arn:aws:acm:us-east-1:123456:certificate"` | ARN of the reverse proxy certificate. |
 | global.tierAccessLevel | string | `"libre"` | Access level for tiers. acceptable values for `tier_access_level` are: `libre`, `regular` and `private`. If omitted, by default common will be treated as `private` |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/dicom-server/README.md b/helm/dicom-server/README.md
@@ -53,5 +53,3 @@ A Helm chart for gen3 Dicom Server
 | volumeMounts | list | `[{"mountPath":"/etc/orthanc/orthanc_config_overwrites.json","name":"config-volume-g3auto","readOnly":true,"subPath":"orthanc_config_overwrites.json"}]` | Volumes to mount to the pod. |
 | volumes | list | `[{"name":"config-volume-g3auto","secret":{"secretName":"orthanc-g3auto"}}]` | Volumes to attach to the pod. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/dicom-viewer/README.md b/helm/dicom-viewer/README.md
@@ -40,5 +40,3 @@ A Helm chart for gen3 Dicom Viewer
 | service.port | int | `80` | The port number that the service exposes. |
 | service.type | string | `"ClusterIP"` | Type of service. Valid values are "ClusterIP", "NodePort", "LoadBalancer", "ExternalName". |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/etl/README.md b/helm/etl/README.md
@@ -103,5 +103,3 @@ A Helm chart for gen3 etl
 | resources.tube.requests.cpu | string | `0.3` | The amount of CPU requested |
 | resources.tube.requests.memory | string | `"128Mi"` | The amount of memory requested |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/fence/README.md b/helm/fence/README.md
@@ -199,5 +199,3 @@ A Helm chart for gen3 Fence
 | volumeMounts | list | `[{"mountPath":"/var/www/fence/local_settings.py","name":"old-config-volume","readOnly":true,"subPath":"local_settings.py"},{"mountPath":"/var/www/fence/fence_credentials.json","name":"json-secret-volume","readOnly":true,"subPath":"fence_credentials.json"},{"mountPath":"/var/www/fence/creds.json","name":"creds-volume","readOnly":true,"subPath":"creds.json"},{"mountPath":"/var/www/fence/config_helper.py","name":"config-helper","readOnly":true,"subPath":"config_helper.py"},{"mountPath":"/fence/fence/static/img/logo.svg","name":"logo-volume","readOnly":true,"subPath":"logo.svg"},{"mountPath":"/fence/fence/static/privacy_policy.md","name":"privacy-policy","readOnly":true,"subPath":"privacy_policy.md"},{"mountPath":"/var/www/fence/fence-config.yaml","name":"config-volume","readOnly":true,"subPath":"fence-config.yaml"},{"mountPath":"/var/www/fence/yaml_merge.py","name":"yaml-merge","readOnly":true,"subPath":"yaml_merge.py"},{"mountPath":"/var/www/fence/fence_google_app_creds_secret.json","name":"fence-google-app-creds-secret-volume","readOnly":true,"subPath":"fence_google_app_creds_secret.json"},{"mountPath":"/var/www/fence/fence_google_storage_creds_secret.json","name":"fence-google-storage-creds-secret-volume","readOnly":true,"subPath":"fence_google_storage_creds_secret.json"},{"mountPath":"/fence/keys/key/jwt_private_key.pem","name":"fence-jwt-keys","readOnly":true,"subPath":"jwt_private_key.pem"}]` | Volumes to mount to the container. |
 | volumes | list | `[{"name":"old-config-volume","secret":{"secretName":"fence-secret"}},{"name":"json-secret-volume","secret":{"optional":true,"secretName":"fence-json-secret"}},{"name":"creds-volume","secret":{"secretName":"fence-creds"}},{"configMap":{"name":"config-helper","optional":true},"name":"config-helper"},{"configMap":{"name":"logo-config"},"name":"logo-volume"},{"name":"config-volume","secret":{"secretName":"fence-config"}},{"name":"fence-google-app-creds-secret-volume","secret":{"secretName":"fence-google-app-creds-secret"}},{"name":"fence-google-storage-creds-secret-volume","secret":{"secretName":"fence-google-storage-creds-secret"}},{"name":"fence-jwt-keys","secret":{"secretName":"fence-jwt-keys"}},{"configMap":{"name":"privacy-policy"},"name":"privacy-policy"},{"configMap":{"name":"fence-yaml-merge","optional":true},"name":"yaml-merge"}]` | Volumes to attach to the container. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/gen3/README.md b/helm/gen3/README.md
@@ -155,5 +155,3 @@ Helm chart to deploy Gen3 Data Commons
 | ssjdispatcher.enabled | bool | `false` | Whether to deploy the ssjdispatcher subchart. |
 | wts.enabled | bool | `true` | Whether to deploy the wts subchart. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/guppy/README.md b/helm/guppy/README.md
@@ -96,5 +96,3 @@ A Helm chart for gen3 Guppy Service
 | volumeMounts | list | `[{"mountPath":"/guppy/guppy_config.json","name":"guppy-config","readOnly":true,"subPath":"guppy_config.json"}]` | Volumes to mount to the container. |
 | volumes | list | `[{"configMap":{"items":[{"key":"guppy_config.json","path":"guppy_config.json"}],"name":"manifest-guppy"},"name":"guppy-config"}]` | Volumes to attach to the pod. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/hatchery/README.md b/helm/hatchery/README.md
@@ -86,5 +86,3 @@ A Helm chart for gen3 Hatchery
 | volumeMounts | list | `[{"mountPath":"/hatchery.json","name":"hatchery-config","readOnly":true,"subPath":"json"}]` | Volumes to mount to the container. |
 | volumes | list | `[{"configMap":{"name":"manifest-hatchery"},"name":"hatchery-config"}]` | Volumes to attach to the container. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/indexd/README.md b/helm/indexd/README.md
@@ -107,5 +107,3 @@ A Helm chart for gen3 indexd
 | volumeMounts | list | `[{"mountPath":"/var/www/indexd/local_settings.py","name":"config-volume","readOnly":true,"subPath":"local_settings.py"}]` | Volumes to mount to the container. |
 | volumes | list | `[{"configMap":{"name":"indexd-uwsgi"},"name":"uwsgi-config"},{"name":"config-volume","secret":{"secretName":"indexd-settings"}}]` | Volumes to attach to the pod |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/karpenter-templates/README.md b/helm/karpenter-templates/README.md
@@ -18,5 +18,3 @@ A Helm chart for managing karpenter templates
 | ebs.volumeType | string | `"gp3"` |  |
 | userdata | string | `"MIME-Version: 1.0\nContent-Type: multipart/mixed; boundary=\"BOUNDARY\"\n\n--BOUNDARY\nContent-Type: text/x-shellscript; charset=\"us-ascii\"\n\n#!/bin/bash -x\ninstanceId=$(curl -s http://169.254.169.254/latest/dynamic/instance-identity/document | jq -r .instanceId)\ncurl https://raw.githubusercontent.com/uc-cdis/cloud-automation/master/files/authorized_keys/ops_team >> /home/ec2-user/.ssh/authorized_keys\necho \"$(jq '.registryPullQPS=0' /etc/kubernetes/kubelet/kubelet-config.json)\" > /etc/kubernetes/kubelet/kubelet-config.json\nsysctl -w fs.inotify.max_user_watches=12000\n\nsudo yum update -y\n\n--BOUNDARY--\n"` |  |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/karpenter-templates/templates/NodePool.yaml b/helm/karpenter-templates/templates/NodePool.yaml
@@ -107,7 +107,7 @@ spec:
           memory.available: 5m
 
   disruption:
-    consolidationPolicy: WhenEmpty
+    consolidationPolicy: WhenEmptyOrUnderutilized
     consolidateAfter: 30s
     # Cycle nodes weekly
     expireAfter: 168h

diff --git a/helm/manifestservice/README.md b/helm/manifestservice/README.md
@@ -85,5 +85,3 @@ A Helm chart for Kubernetes
 | volumeMounts | list | `[{"mountPath":"/var/gen3/config/","name":"config-volume","readOnly":true}]` | Volumes to mount to the container. |
 | volumes | list | `[{"name":"config-volume","secret":{"secretName":"manifestservice-g3auto"}}]` | Volumes to attach to the container. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/metadata/README.md b/helm/metadata/README.md
@@ -124,5 +124,3 @@ A Helm chart for gen3 Metadata Service
 | useAggMds | bool | `"True"` | Set to true to aggregate metadata from multiple other Metadata Service instances. |
 | volumeMounts | list | `[{"mountPath":"/src/.env","name":"config-volume-g3auto","readOnly":true,"subPath":"metadata.env"},{"mountPath":"/aggregate_config.json","name":"config-volume","readOnly":true,"subPath":"aggregate_config.json"},{"mountPath":"/metadata.json","name":"config-manifest","readOnly":true,"subPath":"json"}]` | Volumes to mount to the container. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/peregrine/README.md b/helm/peregrine/README.md
@@ -102,5 +102,3 @@ A Helm chart for gen3 Peregrine service
 | volumeMounts | list | `[{"mountPath":"/var/www/peregrine/settings.py","name":"config-volume","readOnly":true,"subPath":"settings.py"}]` | Volumes to mount to the container. |
 | volumes | list | `[{"emptyDir":{},"name":"shared-data"},{"name":"config-volume","secret":{"secretName":"peregrine-secret"}}]` | Volumes to attach to the container. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/pidgin/README.md b/helm/pidgin/README.md
@@ -82,5 +82,3 @@ A Helm chart for gen3 Pidgin Service
 | strategy.rollingUpdate.maxSurge | int | `1` | Number of additional replicas to add during rollout. |
 | strategy.rollingUpdate.maxUnavailable | int | `0` | Maximum amount of pods that can be unavailable during the update. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/portal/README.md b/helm/portal/README.md
@@ -100,5 +100,3 @@ A Helm chart for gen3 data-portal
 | strategy.rollingUpdate.maxUnavailable | int | `"25%"` | Maximum amount of pods that can be unavailable during the update. |
 | tolerations | list | `[]` | Tolerations to apply to the pod |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/requestor/README.md b/helm/requestor/README.md
@@ -117,5 +117,3 @@ A Helm chart for gen3 Requestor Service
 | strategy.rollingUpdate.maxUnavailable | int | `0` | Maximum amount of pods that can be unavailable during the update. |
 | volumeMounts | list | `nil` | Volumes to mount to the container. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/revproxy/README.md b/helm/revproxy/README.md
@@ -104,5 +104,3 @@ A Helm chart for gen3 revproxy
 | tolerations | list | `[]` | Tolerations to use for the deployment. |
 | userhelperEnabled | bool | `false` |  |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/sheepdog/README.md b/helm/sheepdog/README.md
@@ -110,5 +110,3 @@ A Helm chart for gen3 Sheepdog Service
 | terminationGracePeriodSeconds | int | `50` | sheepdog transactions take forever - try to let the complete before termination |
 | volumeMounts | list | `[{"mountPath":"/var/www/sheepdog/settings.py","name":"config-volume","readOnly":true,"subPath":"settings.py"}]` | Volumes to mount to the container. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/sower/README.md b/helm/sower/README.md
@@ -181,5 +181,3 @@ A Helm chart for gen3 sower
 | volumeMounts | list | `[{"mountPath":"/sower_config.json","name":"sower-config","readOnly":true,"subPath":"sower_config.json"}]` | Volumes to mount to the container. |
 | volumes | list | `[{"configMap":{"items":[{"key":"json","path":"sower_config.json"}],"name":"manifest-sower"},"name":"sower-config"}]` | Volumes to attach to the container. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/ssjdispatcher/README.md b/helm/ssjdispatcher/README.md
@@ -112,5 +112,3 @@ A Helm chart for gen3 ssjdispatcher
 | volumeMounts | list | `[{"mountPath":"/credentials.json","name":"ssjdispatcher-creds-volume","readOnly":true,"subPath":"credentials.json"}]` | Volumes to mount to the container. |
 | volumes | list | `[{"name":"ssjdispatcher-creds-volume","secret":{"secretName":"ssjdispatcher-creds"}}]` | Volumes to attach to the container. |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/helm/wts/README.md b/helm/wts/README.md
@@ -105,5 +105,3 @@ A Helm chart for gen3 workspace token service
 | serviceAccount.name | string | `""` | The name of the service account to use. If not set and create is true, a name is generated using the fullname template |
 | tolerations | list | `[]` | Tolerations for the pods |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/wip/acronymbot/README.md b/wip/acronymbot/README.md
@@ -43,5 +43,3 @@ A Helm chart for gen3 acronymbot
 | serviceAccount.name | string | `""` |  |
 | tolerations | list | `[]` |  |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/wip/auspice/README.md b/wip/auspice/README.md
@@ -41,5 +41,3 @@ A Helm chart for Kubernetes
 | serviceAccount.name | string | `""` |  |
 | tolerations | list | `[]` |  |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/wip/cogwheel/README.md b/wip/cogwheel/README.md
@@ -77,5 +77,3 @@ A Helm chart for gen3 cogwheel
 | volumes[0].name | string | `"cogwheel-g3auto"` |  |
 | volumes[0].secret.secretName | string | `"cogwheel-g3auto"` |  |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/wip/gen3-test-data-job/README.md b/wip/gen3-test-data-job/README.md
@@ -15,5 +15,3 @@ A Helm chart for generating dummy data in gen3
 | gentestdata.test_program | string | `"DEV"` |  |
 | gentestdata.test_project | string | `"test"` |  |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)
diff --git a/wip/terraform-runner-job/README.md b/wip/terraform-runner-job/README.md
@@ -16,5 +16,3 @@ A Helm chart for provisioning prequisites cloud resources for gen3
 | terraform.resource_name | string | `""` |  |
 | terraform.workspace_name | string | `""` |  |
 
-----------------------------------------------
-Autogenerated from chart metadata using [helm-docs v1.13.1](https://github.com/norwoodj/helm-docs/releases/v1.13.1)