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Centre for Bioinformatics, University of Oslo

The hub of bioinformatics and computational biology at the University of Oslo

29 followers
Oslo, Norway
https://www.mn.uio.no/sbi/english/

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immuneML immuneML Public

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

Python 68 30
compairr compairr Public

Comparison of Adaptive Immune Receptor Repertoires

C++ 27 6
graph_peak_caller graph_peak_caller Public

ChIP-seq peak caller for reads mapped to a graph-based reference genome

Python 22 9

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Showing 10 of 83 repositories

immuneML Public
immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

uio-bmi/immuneML’s past year of commit activity

Python 68 AGPL-3.0 30 0 0 Updated Jul 25, 2025
StarSignDNA Public

uio-bmi/StarSignDNA’s past year of commit activity

Python 3 MIT 1 0 0 Updated Jul 25, 2025
fdr_under_dependencies Public

uio-bmi/fdr_under_dependencies’s past year of commit activity

Jupyter Notebook 3 MIT 0 0 0 Updated Jun 13, 2025
ligo Public
LIgO is a tool for simulation of adaptive immune receptors and repertoires.

uio-bmi/ligo’s past year of commit activity

Python 0 AGPL-3.0 2 1 0 Updated May 27, 2025
dagsim Public
A framework and specification language for simulating data based on graphical models

uio-bmi/dagsim’s past year of commit activity

Python 19 AGPL-3.0 3 1 0 Updated May 2, 2025
compairr Public
Comparison of Adaptive Immune Receptor Repertoires

uio-bmi/compairr’s past year of commit activity

C++ 27 AGPL-3.0 6 10 0 Updated Jan 29, 2025
localega-tsd-proxy Public archive

uio-bmi/localega-tsd-proxy’s past year of commit activity

Java 0 MIT 0 6 1 Updated Jan 22, 2025
mq-interceptor Public archive
RabbitMQ interceptor for LocalEGA

uio-bmi/mq-interceptor’s past year of commit activity

Go 0 MIT 0 0 0 Updated Jan 22, 2025
crypt4gh Public archive
Crypt4GH standard implementation

uio-bmi/crypt4gh’s past year of commit activity

Java 2 MIT 6 2 6 Updated Jan 22, 2025
pilot_data_analysis_AIRR_ML_BM_2025 Public
Scripts enabling the reproducibility of pilot data analysis carried out for AIRR-ML-BM-2025

uio-bmi/pilot_data_analysis_AIRR_ML_BM_2025’s past year of commit activity

Python 0 0 0 0 Updated Jan 14, 2025

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