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@umccr

UMCCR

University of Melbourne Centre for Cancer Research

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  1. htsget-rs htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    Rust 46 10

  2. infrastructure infrastructure Public

    Infrastructure as Code at UMCCR

    Python 11 8

  3. cwl-ica cwl-ica Public

    A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

    Common Workflow Language 12 2

  4. orcabus orcabus Public

    We are moving to https://github.com/orcabus

    Python 5

  5. RNAsum RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    R 8 6

  6. orca-ui orca-ui Public

    TypeScript 1

Repositories

Showing 10 of 124 repositories
  • orca-ui Public
    umccr/orca-ui’s past year of commit activity
    TypeScript 1 MIT 0 16 (1 issue needs help) 1 Updated Nov 6, 2025
  • wrapica Public

    A suite of secondary / tertiary functions for running ICA API calls

    umccr/wrapica’s past year of commit activity
    Python 2 GPL-3.0 0 7 0 Updated Nov 6, 2025
  • orcahouse Public

    🐳 UMCCR Pipeline & Workflow Data Warehouse

    umccr/orcahouse’s past year of commit activity
    HCL 0 0 13 0 Updated Nov 6, 2025
  • gcs-deploy Public
    umccr/gcs-deploy’s past year of commit activity
    Python 0 0 0 0 Updated Nov 6, 2025
  • sash Public

    UMCCR post-processing WGS workflow

    umccr/sash’s past year of commit activity
    Nextflow 1 MIT 0 3 2 Updated Nov 6, 2025
  • copyrite Public

    A CLI tool for efficient checksum/copy operations across object stores

    umccr/copyrite’s past year of commit activity
    Rust 2 MIT 0 16 2 Updated Nov 5, 2025
  • dracarys Public

    🐲 DRAGEN workflow tidying 🔥

    umccr/dracarys’s past year of commit activity
    R 1 0 20 0 Updated Nov 4, 2025
  • RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    umccr/RNAsum’s past year of commit activity
    R 8 6 17 0 Updated Nov 4, 2025
  • libica Public

    🐍 Python SDK for Illumina Connected Analytics (ICA) 🐉

    umccr/libica’s past year of commit activity
    Python 6 MIT 4 0 0 Updated Nov 3, 2025
  • htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    umccr/htsget-rs’s past year of commit activity
    Rust 46 MIT 10 14 4 Updated Nov 3, 2025

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