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@brendanreardon brendanreardon released this 15 Feb 22:23
· 21 commits to main since this release
0.4.2
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Learn about vigilant mode.

This release utilizes the v.2021-02-04 release of the underlying MOAlmanac database.

Revisions:

  • Added a README to the moalmanac/datasources/ folder, specifying which datasources are available for use immediately from Github and which ones either need to be copied from Docker or processed from source.
  • Added Oncotree code as an output columns for assertions in the .actionable.txt output.
  • Revised documentation for COSMIC, moalmanac/datasources/cosmic/, and ExAC, moalmanac/datasources/exac/, by expanding upon how to generate the datasources from source.
  • Revised documentation for preclinical data leveraged by MOAlmanac. Previously, moalmanac/datasources/preclinical/ contained output tables from the paper's repository and referenced the repository for documentation. Now, all utilized tables can be generated within this repository from source.
  • Revised README in the root directory to emphasis that not all datasources are immediately ready for use after pulling this repository from Github.
  • Updated Dockerfile to compile moalmanac and preclinical datasources later, to hopefully reduce build time.
  • Updated WDL to use the latest version of this method, increased default resource requirements for buffer, and preallocated additional matches json output.

Bug fixes:

  • Annotation with ExAC now coerces integer columns from strings to floats and then integers, making the annotator resilient to some MAFs which have positions coded as floats instead of integers.
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