Prepare for 0.4.1 release (#88)

* Bump version number. * Update copyright year.
vanvalenlab · Jan 27, 2024 · 499ed33 · 499ed33
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diff --git a/README.md b/README.md
@@ -66,7 +66,7 @@ docker run --gpus '"device=0"' -it \
 
 ## Copyright
 
-Copyright © 2019-2023 [The Van Valen Lab](http://www.vanvalen.caltech.edu/) at the California Institute of Technology (Caltech), with support from the Shurl and Kay Curci Foundation, Google Research Cloud, the Paul Allen Family Foundation, & National Institutes of Health (NIH) under Grant U24CA224309-01.
+Copyright © 2019-2024 [The Van Valen Lab](http://www.vanvalen.caltech.edu/) at the California Institute of Technology (Caltech), with support from the Shurl and Kay Curci Foundation, Google Research Cloud, the Paul Allen Family Foundation, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 All rights reserved.
 
 ## License

diff --git a/deepcell_spots/__init__.py b/deepcell_spots/__init__.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/_version.py b/deepcell_spots/_version.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.
@@ -27,10 +27,10 @@
 __title__ = 'DeepCell-Spots'
 __description__ = 'Deep learning for fluorescent spot detection'
 __url__ = 'https://github.com/vanvalenlab/deepcell-spots'
-__version__ = '0.3.2'
+__version__ = '0.4.1'
 __download_url__ = '{}/tarball/{}'.format(__url__, __version__)
 __author__ = 'The Van Valen Lab'
 __author_email__ = 'vanvalen@caltech.edu'
 __license__ = 'LICENSE'
-__copyright__ = 'Copyright 2019-2023 The Van Valen Lab at the ' \
+__copyright__ = 'Copyright 2019-2024 The Van Valen Lab at the ' \
     'California Institute of Technology (Caltech)'
diff --git a/deepcell_spots/applications/__init__.py b/deepcell_spots/applications/__init__.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/applications/polaris.py b/deepcell_spots/applications/polaris.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/applications/polaris_test.py b/deepcell_spots/applications/polaris_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/applications/spot_decoding.py b/deepcell_spots/applications/spot_decoding.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/applications/spot_decoding_test.py b/deepcell_spots/applications/spot_decoding_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/applications/spot_detection.py b/deepcell_spots/applications/spot_detection.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/applications/spot_detection_test.py b/deepcell_spots/applications/spot_detection_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/cluster_vis.py b/deepcell_spots/cluster_vis.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/cluster_vis_test.py b/deepcell_spots/cluster_vis_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/decoding_functions.py b/deepcell_spots/decoding_functions.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/decoding_functions_test.py b/deepcell_spots/decoding_functions_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/dotnet.py b/deepcell_spots/dotnet.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/dotnet_losses.py b/deepcell_spots/dotnet_losses.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/dotnet_losses_test.py b/deepcell_spots/dotnet_losses_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/dotnet_test.py b/deepcell_spots/dotnet_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/image_alignment.py b/deepcell_spots/image_alignment.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/image_alignment_test.py b/deepcell_spots/image_alignment_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/image_generators.py b/deepcell_spots/image_generators.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/image_generators_test.py b/deepcell_spots/image_generators_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/multiplex.py b/deepcell_spots/multiplex.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/multiplex_test.py b/deepcell_spots/multiplex_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/point_metrics.py b/deepcell_spots/point_metrics.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/point_metrics_test.py b/deepcell_spots/point_metrics_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/simulate_data.py b/deepcell_spots/simulate_data.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/simulate_data_test.py b/deepcell_spots/simulate_data_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/singleplex.py b/deepcell_spots/singleplex.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/singleplex_test.py b/deepcell_spots/singleplex_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/spot_em.py b/deepcell_spots/spot_em.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/spot_em_test.py b/deepcell_spots/spot_em_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/training.py b/deepcell_spots/training.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/utils/__init__.py b/deepcell_spots/utils/__init__.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/utils/augmentation_utils.py b/deepcell_spots/utils/augmentation_utils.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/utils/augmentation_utils_test.py b/deepcell_spots/utils/augmentation_utils_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/utils/data_utils.py b/deepcell_spots/utils/data_utils.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/utils/data_utils_test.py b/deepcell_spots/utils/data_utils_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/utils/postprocessing_utils.py b/deepcell_spots/utils/postprocessing_utils.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/utils/postprocessing_utils_test.py b/deepcell_spots/utils/postprocessing_utils_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/utils/preprocessing_utils.py b/deepcell_spots/utils/preprocessing_utils.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/utils/preprocessing_utils_test.py b/deepcell_spots/utils/preprocessing_utils_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/utils/results_utils.py b/deepcell_spots/utils/results_utils.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/utils/results_utils_test.py b/deepcell_spots/utils/results_utils_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/setup.py b/setup.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2023 The Van Valen Lab at the California Institute of
+# Copyright 2019-2024 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.