feat: adding MANIFEST.txt files (#82)

varfish-org · Jun 5, 2024 · f6024f9 · f6024f9
1 parent b0e2181
commit f6024f9
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diff --git a/.github/actions/clinvar-genes-import/run.sh b/.github/actions/clinvar-genes-import/run.sh
@@ -42,3 +42,9 @@ x-created-from:
 EOF
 
 ls -lhR $OUTPUT_DIR
+
+cd $OUTPUT_DIR
+hashdeep -l -r . >/tmp/MANIFEST.txt
+CHECKSUM=$(sha256sum /tmp/MANIFEST.txt | cut -d ' ' -f 1)
+echo "## EOF SHA256=$CHECKSUM" >> /tmp/MANIFEST.txt
+cp /tmp/MANIFEST.txt .
diff --git a/.github/actions/clinvar-minimal-import/run.sh b/.github/actions/clinvar-minimal-import/run.sh
@@ -44,3 +44,9 @@ EOF
 
 ls -lhR $OUTPUT_DIR
 cat $OUTPUT_DIR/$genome_release/clinvar-minimal/spec.yaml
+
+cd $OUTPUT_DIR/$genome_release/clinvar-minimal
+hashdeep -l -r . >/tmp/MANIFEST.txt
+CHECKSUM=$(sha256sum /tmp/MANIFEST.txt | cut -d ' ' -f 1)
+echo "## EOF SHA256=$CHECKSUM" >> /tmp/MANIFEST.txt
+cp /tmp/MANIFEST.txt .
diff --git a/.github/actions/clinvar-sv-import/run.sh b/.github/actions/clinvar-sv-import/run.sh
@@ -45,3 +45,9 @@ EOF
 
 ls -lhR $OUTPUT_DIR
 cat $OUTPUT_DIR/$genome_release/clinvar-sv/spec.yaml
+
+cd $OUTPUT_DIR/$genome_release/clinvar-sv
+hashdeep -l -r . >/tmp/MANIFEST.txt
+CHECKSUM=$(sha256sum /tmp/MANIFEST.txt | cut -d ' ' -f 1)
+echo "## EOF SHA256=$CHECKSUM" >> /tmp/MANIFEST.txt
+cp /tmp/MANIFEST.txt .
diff --git a/.github/workflows/-build-artifacts.yml b/.github/workflows/-build-artifacts.yml
@@ -59,6 +59,7 @@ jobs:
           - GRCh37
           - GRCh38
     steps:
+      - run: sudo apt install -y hashdeep
       - uses: actions/checkout@v4
       - uses: ./.github/actions/clinvar-minimal-import
         with:
@@ -78,6 +79,7 @@ jobs:
           - GRCh37
           - GRCh38
     steps:
+      - run: sudo apt install -y hashdeep
       - uses: actions/checkout@v4
       - uses: ./.github/actions/clinvar-sv-import
         with:
@@ -91,6 +93,7 @@ jobs:
     needs:
       - Download-ClinVar
     steps:
+      - run: sudo apt install -y hashdeep
       - uses: actions/checkout@v4
       - uses: ./.github/actions/clinvar-genes-import
         with: