updated testing db + bootstrap.sh to support the brca2 zar1l testcase

varfish-org · Mar 26, 2024 · eaa6ff5 · eaa6ff5
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Showing 20 changed files with 36 additions and 39 deletions.
diff --git a/tests/data/annotate/db/bootstrap.sh b/tests/data/annotate/db/bootstrap.sh
diff --git a/tests/data/annotate/db/grch37/seqvars/clinvar/000016.sst b/tests/data/annotate/db/grch37/seqvars/clinvar/000016.sst
diff --git a/tests/data/annotate/db/grch37/seqvars/clinvar/000018.sst b/tests/data/annotate/db/grch37/seqvars/clinvar/000018.sst
diff --git a/tests/data/annotate/db/grch37/seqvars/clinvar/000020.sst b/tests/data/annotate/db/grch37/seqvars/clinvar/000020.sst
diff --git a/tests/data/annotate/db/grch37/seqvars/clinvar/IDENTITY b/tests/data/annotate/db/grch37/seqvars/clinvar/IDENTITY
diff --git a/tests/data/annotate/db/grch37/seqvars/clinvar/LOG b/tests/data/annotate/db/grch37/seqvars/clinvar/LOG
diff --git a/tests/data/annotate/db/grch37/seqvars/clinvar/MANIFEST-000005 b/tests/data/annotate/db/grch37/seqvars/clinvar/MANIFEST-000005
diff --git a/tests/data/annotate/db/grch37/seqvars/clinvar/OPTIONS-000011 b/tests/data/annotate/db/grch37/seqvars/clinvar/OPTIONS-000011
diff --git a/tests/data/annotate/db/grch37/seqvars/clinvar/OPTIONS-000013 b/tests/data/annotate/db/grch37/seqvars/clinvar/OPTIONS-000013
diff --git a/tests/data/annotate/db/grch37/txs.bin.zst b/tests/data/annotate/db/grch37/txs.bin.zst
diff --git a/tests/data/annotate/db/grch38/seqvars/clinvar/000016.sst b/tests/data/annotate/db/grch38/seqvars/clinvar/000016.sst
diff --git a/tests/data/annotate/db/grch38/seqvars/clinvar/000018.sst b/tests/data/annotate/db/grch38/seqvars/clinvar/000018.sst
diff --git a/tests/data/annotate/db/grch38/seqvars/clinvar/000020.sst b/tests/data/annotate/db/grch38/seqvars/clinvar/000020.sst
diff --git a/tests/data/annotate/db/grch38/seqvars/clinvar/IDENTITY b/tests/data/annotate/db/grch38/seqvars/clinvar/IDENTITY
diff --git a/tests/data/annotate/db/grch38/seqvars/clinvar/LOG b/tests/data/annotate/db/grch38/seqvars/clinvar/LOG
diff --git a/tests/data/annotate/db/grch38/seqvars/clinvar/MANIFEST-000005 b/tests/data/annotate/db/grch38/seqvars/clinvar/MANIFEST-000005
diff --git a/tests/data/annotate/db/grch38/seqvars/clinvar/OPTIONS-000011 b/tests/data/annotate/db/grch38/seqvars/clinvar/OPTIONS-000011
diff --git a/tests/data/annotate/db/grch38/seqvars/clinvar/OPTIONS-000013 b/tests/data/annotate/db/grch38/seqvars/clinvar/OPTIONS-000013
diff --git a/tests/data/annotate/db/grch38/txs.bin.zst b/tests/data/annotate/db/grch38/txs.bin.zst
diff --git a/tests/data/annotate/db/hgnc.tsv b/tests/data/annotate/db/hgnc.tsv