sagemathgh-38788: Ruff e713

Using ruff to auto-fix all E713 codes

Test for membership should be `not in`

then activating this check in the linter

### 📝 Checklist

- [x] The title is concise and informative.
- [x] The description explains in detail what this PR is about.
- [ ] I have linked a relevant issue or discussion.
- [ ] I have created tests covering the changes.
- [ ] I have updated the documentation and checked the documentation
preview.

URL: sagemath#38788
Reported by: Frédéric Chapoton
Reviewer(s): Vincent Macri

.github/sync_labels.py

@@ -609,7 +609,7 @@ def actor_valid(self):
         for com in coms:
             for auth in com['authors']:
                 login = auth['login']
-                if not login in authors:
+                if login not in authors:
                     if not self.is_this_bot(login) and login != author:
                         debug('PR %s has recent commit by %s' % (self._issue, login))
                         authors.append(login)
@@ -746,7 +746,7 @@ def add_label(self, label):
         r"""
         Add the given label to the issue or PR.
         """
-        if not label in self.get_labels():
+        if label not in self.get_labels():
             self.edit(label, '--add-label')
             info('Add label to %s: %s' % (self._issue, label))
 

build/pkgs/configure/checksums.ini

@@ -1,3 +1,3 @@
 tarball=configure-VERSION.tar.gz
-sha1=140d921780212198287a0d626b8c9655d4408f7a
-sha256=4f82ec8bdb67c4dffd43daddd5160e8f9c624f6a5cf16c4128bfab2e5ddca459
+sha1=70467c0efc0269f41bb620ec4dab17ca4b66bf23
+sha256=6f4649eca09e31d7c5e0e60cd5a2b5b1b9759991e300c255dd768fb02fbefbdf

build/pkgs/configure/package-version.txt

@@ -1 +1 @@
-2b4fe39e420df022d34a67fbc820252618e15f83
+48c2d9c25d22fbb36725d2d4aa8305538dd21654

src/sage/coding/gabidulin_code.py

@@ -207,7 +207,7 @@ def __init__(self, base_field, length, dimension, sub_field=None,
             if not len(evaluation_points) == length:
                 raise ValueError("the number of evaluation points should be equal to the length of the code")
             for i in range(length):
-                if not evaluation_points[i] in base_field:
+                if evaluation_points[i] not in base_field:
                     raise ValueError("evaluation point does not belong to the 'base field'")
             basis = self.matrix_form_of_vector(vector(evaluation_points))
             if basis.rank() != length:

src/sage/dynamics/arithmetic_dynamics/endPN_minimal_model.py

@@ -590,7 +590,7 @@ def BM_all_minimal(vp, return_transformation=False, D=None):
     for M in all_M:
         new_map = mp.conjugate(M)
         new_map.normalize_coordinates()
-        if not [new_map, M] in all_maps:
+        if [new_map, M] not in all_maps:
             all_maps.append([new_map, M])
 
     #Split into conjugacy classes

src/sage/dynamics/arithmetic_dynamics/projective_ds.py

@@ -2935,7 +2935,7 @@ def parallel_function(morphism):
         # Calling possible_periods for each prime in parallel
         parallel_data = []
         for q in primes(primebound[0], primebound[1] + 1):
-            if not (q in badprimes):
+            if q not in badprimes:
                 F = self.change_ring(GF(q))
                 parallel_data.append(((F,), {}))
 
@@ -6768,7 +6768,7 @@ def is_Lattes(self):
         (crit_set, post_crit_set) = crit, list(post_crit)
 
         # All Lattes maps have 3 or 4 post critical values
-        if not len(post_crit_set) in [3, 4]:
+        if len(post_crit_set) not in [3, 4]:
             return False
 
         f = F_crit.dehomogenize(1)[0]
@@ -7228,7 +7228,7 @@ def lift_to_rational_periodic(self, points_modp, B=None):
                     while not done and k <= n:
                         newP = self(newP)
                         if newP == P:
-                            if not ([P, k] in good_points):
+                            if [P, k] not in good_points:
                                 good_points.append([newP, k])
                             done = True
                         k += 1
@@ -7499,7 +7499,7 @@ def all_periodic_points(self, **kwds):
                 pos_points = []
                 # check period, remove duplicates
                 for i in range(len(all_points)):
-                    if all_points[i][1] in periods and not (all_points[i] in pos_points):
+                    if all_points[i][1] in periods and all_points[i] not in pos_points:
                         pos_points.append(all_points[i])
                 periodic_points = DS.lift_to_rational_periodic(pos_points,B)
                 for p,n in periodic_points:
@@ -7594,7 +7594,7 @@ def all_rational_preimages(self, points):
             P = points.pop()
             preimages = self.rational_preimages(P)
             for i in range(len(preimages)):
-                if not preimages[i] in preperiodic:
+                if preimages[i] not in preperiodic:
                     points.append(preimages[i])
                     preperiodic.add(preimages[i])
         return list(preperiodic)
@@ -9073,7 +9073,7 @@ def is_newton(self, return_conjugation=False):
         """
         if self.degree() == 1:
             raise NotImplementedError("degree one Newton maps are trivial")
-        if not self.base_ring() in NumberFields():
+        if self.base_ring() not in NumberFields():
             raise NotImplementedError("only implemented over number fields")
         # check if Newton map
         sigma_1 = self.sigma_invariants(1)

src/sage/functions/bessel.py

@@ -1228,7 +1228,7 @@ def Bessel(*args, **kwds):
             _type = kwds['typ']
         else:
             _type = 'J'
-    if not (_type in ['I', 'J', 'K', 'Y']):
+    if _type not in ['I', 'J', 'K', 'Y']:
         raise ValueError("type must be one of I, J, K, Y")
 
     # return the function

src/sage/games/hexad.py

@@ -466,15 +466,15 @@ def find_hexad3(self, pts, x0, x1):
         L = set(pts)
         H = {x0, x1}
         for i in range(18):
-            if (not (MINIMOG[0][2] in H) and L <= picture_set(self.picture21, self.square[i])):
+            if (MINIMOG[0][2] not in H and L <= picture_set(self.picture21, self.square[i])):
                 WHAT = ["square " + str(i), "picture " + str(MINIMOG[0][2])]
                 H = H | picture_set(self.picture21, self.square[i])
                 return list(H), WHAT
-            if (not (MINIMOG[2][1] in H) and L <= picture_set(self.picture02, self.square[i])):
+            if (MINIMOG[2][1] not in H and L <= picture_set(self.picture02, self.square[i])):
                 WHAT = ["square " + str(i), "picture " + str(MINIMOG[2][1])]
                 H = H | picture_set(self.picture02, self.square[i])
                 return list(H), WHAT
-            if (not (MINIMOG[0][0] in H) and L <= picture_set(self.picture00, self.square[i])):
+            if (MINIMOG[0][0] not in H and L <= picture_set(self.picture00, self.square[i])):
                 WHAT = ["square " + str(i), "picture " + str(MINIMOG[0][0])]
                 H = H | picture_set(self.picture00, self.square[i])
                 return list(H), WHAT

src/sage/geometry/hyperplane_arrangement/plot.py

@@ -212,14 +212,14 @@ def plot(hyperplane_arrangement, **kwds):
     if 'ranges' in kwds:
         ranges_set = True
         ranges = kwds.pop('ranges')
-        if not type(ranges) in [list,tuple]: # ranges is a single number
+        if type(ranges) not in [list,tuple]: # ranges is a single number
             ranges = [ranges] * N
         # So ranges is some type of list.
         elif dim == 2: # arrangement of lines in the plane
-            if not type(ranges[0]) in [list,tuple]: # a single interval
+            if type(ranges[0]) not in [list,tuple]: # a single interval
                 ranges = [ranges] * N
         elif dim == 3: # arrangement of planes in 3-space
-            if not type(ranges[0][0]) in [list,tuple]:
+            if type(ranges[0][0]) not in [list,tuple]:
                 ranges = [ranges] * N
         elif dim not in [2,3]: # ranges is not an option unless dim is 2 or 3
             ranges_set = False

src/sage/geometry/polyhedron/base5.py

@@ -2452,7 +2452,7 @@ def _test_lawrence(self, tester=None, **options):
         if tester is None:
             tester = self._tester(**options)
 
-        if self.backend() == 'normaliz' and not self.base_ring() in (ZZ, QQ):
+        if self.backend() == 'normaliz' and self.base_ring() not in (ZZ, QQ):
             # Speeds up the doctest for significantly.
             self = self.change_ring(self._internal_base_ring)
 

src/sage/graphs/digraph_generators.py

@@ -1657,7 +1657,7 @@ def RandomDirectedGNM(self, n, m, loops=False):
         if is_dense:
             for u in range(n):
                 for v in range(n):
-                    if ((u != v) or loops) and (not (v in adj[u])):
+                    if ((u != v) or loops) and (v not in adj[u]):
                         D.add_edge(u, v)
 
         return D

src/sage/graphs/generators/classical_geometries.py

@@ -1107,7 +1107,7 @@ def T2starGeneralizedQuadrangleGraph(q, dual=False, hyperoval=None, field=None,
                 raise RuntimeError("incorrect hyperoval size")
             for L in Theta.blocks():
                 if set(L).issubset(Pi):
-                    if not len(HO.intersection(L)) in [0, 2]:
+                    if len(HO.intersection(L)) not in [0, 2]:
                         raise RuntimeError("incorrect hyperoval")
 
     L = [[y for y in z if y not in HO]

src/sage/graphs/generic_graph.py

@@ -18928,7 +18928,7 @@ def breadth_first_search(self, start, ignore_direction=False,
             # Non-existing start vertex is detected later if distance > 0.
             if not distance:
                 for v in queue:
-                    if not v[0] in self:
+                    if v[0] not in self:
                         raise LookupError("start vertex ({0}) is not a vertex of the graph".format(v[0]))
 
             for v, d in queue:
@@ -22678,7 +22678,7 @@ def graphviz_string(self, **options):
             for f in edge_option_functions:
                 edge_options.update(f((u, v, label)))
 
-            if not edge_options['edge_string'] in ['--', '->']:
+            if edge_options['edge_string'] not in ['--', '->']:
                 raise ValueError("edge_string(='{}') in edge_options dict for "
                                  "the edge ({}, {}) should be '--' or '->'"
                                  .format(edge_options['edge_string'], u, v))

src/sage/graphs/graph_latex.py

@@ -1170,7 +1170,7 @@ def set_option(self, option_name, option_value=None):
                     raise TypeError('%s option must be a dictionary, not %s' % (name, value))
                 else:
                     for key, x in value.items():
-                        if not type(x) in [int, Integer, float, RealLiteral] or not x >= 0.0:
+                        if type(x) not in [int, Integer, float, RealLiteral] or not x >= 0.0:
                             raise ValueError('%s option for %s needs to be a positive number, not %s' % (name, key, x))
             elif name in boolean_dicts:
                 if not isinstance(value, dict):

src/sage/graphs/orientations.py

@@ -479,7 +479,7 @@ def _strong_orientations_of_a_mixed_graph(Dg, V, E):
     while i < length:
         u, v = E[i]
         Dg.delete_edge(u, v)
-        if not (v in Dg.depth_first_search(u)):
+        if v not in Dg.depth_first_search(u):
             # del E[i] in constant time
             E[i] = E[-1]
             E.pop()
@@ -490,7 +490,7 @@ def _strong_orientations_of_a_mixed_graph(Dg, V, E):
         else:
             Dg.add_edge(u, v)
             Dg.delete_edge(v, u)
-            if not (u in Dg.depth_first_search(v)):
+            if u not in Dg.depth_first_search(v):
                 # del E[i] in constant time
                 E[i] = E[-1]
                 E.pop()

src/sage/interfaces/maxima_lib.py

@@ -1657,7 +1657,7 @@ def sr_to_max(expr):
             return EclObject(special_sage_to_max[op](*[sr_to_max(o) for o in expr.operands()]))
         elif op == tuple:
             return EclObject(([mlist], list(sr_to_max(op) for op in expr.operands())))
-        elif not (op in sage_op_dict):
+        elif op not in sage_op_dict:
             # Maxima does some simplifications automatically by default
             # so calling maxima(expr) can change the structure of expr
             # op_max=caar(maxima(expr).ecl())

src/sage/knots/knotinfo.py

@@ -2658,7 +2658,7 @@ def __getitem__(self, item):
             [<KnotInfo.K6_1: '6_1'>, <KnotInfo.K6_2: '6_2'>, <KnotInfo.K6_3: '6_3'>]
         """
         from sage.rings.integer import Integer
-        if not type(item) in (int, Integer):
+        if type(item) not in (int, Integer):
             raise ValueError('item must be an integer')
         l = self.list()
         max_item = len(l)
@@ -2701,7 +2701,7 @@ def __call__(self, item):
             return self[item]
 
         from sage.rings.integer import Integer
-        if not type(item) in (int, Integer):
+        if type(item) not in (int, Integer):
             raise ValueError('item must be an integer')
         l = self.list()
         max_item = len(l) + 1

src/sage/knots/link.py

@@ -1201,7 +1201,7 @@ def _khovanov_homology_cached(self, height, ring=ZZ):
             else:
                 m = matrix(ring, len(bases[(i,j)]), 0)
             complexes[i] = m.transpose()
-            if not (i-1, j) in bases:
+            if (i-1, j) not in bases:
                 complexes[i-1] = matrix(ring, len(bases[(i,j)]), 0)
         homologies = ChainComplex(complexes).homology()
         return tuple(sorted(homologies.items()))
@@ -2313,7 +2313,7 @@ def seifert_circles(self):
                 while a not in par:
                     par.append(a)
                     posnext = C[(C.index(a) - 1) % 4]
-                    if tails[posnext] == C and not [posnext] in result:
+                    if tails[posnext] == C and [posnext] not in result:
                         a = posnext
                     else:
                         a = C[(C.index(a) + 1) % 4]

src/sage/manifolds/point.py

@@ -689,7 +689,7 @@ def __eq__(self, other):
             diff = xs - xo
             period = periods[ind]
             if period is not None:
-                if not (diff/period in ZZ):
+                if diff/period not in ZZ:
                     return False
             else:
                 if isinstance(diff, Expression) and not diff.is_trivial_zero():

src/sage/quadratic_forms/genera/genus.py

@@ -509,12 +509,12 @@ def is_2_adic_genus(genus_symbol_quintuple_list) -> bool:
                 return False
         if s[1] == 2 and s[3] == 1:
             if s[2] % 8 in (1, 7):
-                if not s[4] in (0, 2, 6):
+                if s[4] not in (0, 2, 6):
                     return False
             if s[2] % 8 in (3, 5):
-                if not s[4] in (2, 4, 6):
+                if s[4] not in (2, 4, 6):
                     return False
-        if (s[1] - s[4]) % 2 == 1:
+        if (s[1] - s[4]) % 2:
             return False
         if s[3] == 0 and s[4] != 0:
             return False
@@ -2802,7 +2802,8 @@ def direct_sum(self, other):
         signature_pair = (p1 + p2, n1 + n2)
 
         primes = [s.prime() for s in self.local_symbols()]
-        primes += [s.prime() for s in other.local_symbols() if not s.prime() in primes]
+        primes.extend(s.prime() for s in other.local_symbols()
+                      if s.prime() not in primes)
         primes.sort()
         local_symbols = []
         for p in primes:

src/sage/repl/rich_output/display_manager.py

@@ -634,10 +634,10 @@ def _rich_output_formatter(self, obj, rich_repr_kwds):
         rich_output = self._promote_output(rich_output)
         # check that the output container types are valid for the backend
         supported = self._backend.supported_output()
-        if not (type(plain_text) in supported):
+        if type(plain_text) not in supported:
             raise OutputTypeException(
                 'text output container not supported: {0}'.format(type(plain_text)))
-        if not (type(rich_output) in supported):
+        if type(rich_output) not in supported:
             raise OutputTypeException(
                 'output container not supported: {0}'.format(type(rich_output)))
         return plain_text, rich_output

src/sage/rings/function_field/order_basis.py

@@ -102,7 +102,7 @@ def __init__(self, basis, check=True):
         if check:
             if self._module.rank() != field.degree():
                 raise ValueError("basis {} is not linearly independent".format(basis))
-            if not to_V(field(1)) in self._module:
+            if to_V(field(1)) not in self._module:
                 raise ValueError("the identity element must be in the module spanned by basis {}".format(basis))
             if not all(to_V(a*b) in self._module for a in basis for b in basis):
                 raise ValueError("the module generated by basis {} must be closed under multiplication".format(basis))
@@ -399,7 +399,7 @@ def __init__(self, basis, check=True):
         if check:
             if self._module.rank() != field.degree():
                 raise ValueError("basis {} is not linearly independent".format(basis))
-            if not W.coordinate_vector(to(field(1))) in self._module:
+            if W.coordinate_vector(to(field(1))) not in self._module:
                 raise ValueError("the identity element must be in the module spanned by basis {}".format(basis))
             if not all(W.coordinate_vector(to(a*b)) in self._module for a in basis for b in basis):
                 raise ValueError("the module generated by basis {} must be closed under multiplication".format(basis))
@@ -431,7 +431,7 @@ def _element_constructor_(self, f):
 
         V, fr_V, to_V = F.vector_space()
         W = self._ambient_space
-        if not W.coordinate_vector(to_V(f)) in self._module:
+        if W.coordinate_vector(to_V(f)) not in self._module:
             raise TypeError("{} is not an element of {}".format(f, self))
 
         return f

src/sage/rings/function_field/order_polymod.py

@@ -888,7 +888,7 @@ def ideal(self, *gens):
         """
         if len(gens) == 1:
             gens = gens[0]
-            if not type(gens) in (list,tuple):
+            if type(gens) not in (list,tuple):
                 gens = (gens,)
         mgens = [g * b for g in gens for b in self._basis]
         return self.ideal_with_gens_over_base(mgens)

src/sage/rings/function_field/order_rational.py

@@ -83,7 +83,7 @@ def _element_constructor_(self, f):
         except TypeError:
             raise TypeError("unable to convert to an element of {}".format(F))
 
-        if not f.denominator() in self.function_field().constant_base_field():
+        if f.denominator() not in self.function_field().constant_base_field():
             raise TypeError("%r is not an element of %r" % (f,self))
 
         return f

src/sage/rings/number_field/number_field_ideal.py

@@ -2161,7 +2161,7 @@ def reduce(self, f):
 
         R = self.number_field().maximal_order()
 
-        if not (f in R):
+        if f not in R:
             raise TypeError("reduce only defined for integral elements")
 
         Rbasis = R.basis()

src/sage/rings/number_field/order.py

@@ -894,7 +894,7 @@ def ring_generators(self):
             gens.append(g)
             n.append(g.absolute_minpoly().degree())
             W = A.span([to_V(x) for x in monomials(gens, n)])
-            remaining = [x for x in remaining if not to_V(x) in W]
+            remaining = [x for x in remaining if to_V(x) not in W]
         return Sequence(gens, immutable=True)
 
     @cached_method
@@ -1590,7 +1590,7 @@ def _element_constructor_(self, x):
         if not isinstance(x, Element) or x.parent() is not self._K:
             x = self._K(x)
         V, _, embedding = self._K.vector_space()
-        if not embedding(x) in self._module_rep:
+        if embedding(x) not in self._module_rep:
             raise TypeError("Not an element of the order.")
         return self._element_type(self, x)
 

src/sage/rings/pari_ring.py

@@ -124,7 +124,7 @@ def __pow__(self, other):
             sage: a^2
             9
         """
-        if not (other in PariRing()):
+        if other not in PariRing():
             other = Pari(other)
         return self.__class__(self.__x ** other.__x, parent=_inst)
 

src/sage/rings/polynomial/pbori/ll.py

@@ -79,7 +79,7 @@ def eliminate(polys, on_the_fly=False, prot=False, reduction_function=None,
         lm = p.lex_lead()
         if lm.deg() == 1:
 
-            if not (lm in linear_leading_monomials):
+            if lm not in linear_leading_monomials:
                 linear_leading_monomials.add(lm)
                 linear_leads.append(p)
             else: