Merge remote-tracking branch 'origin/fix-ci' into deconstruct

vgteam · Jan 12, 2024 · 38f7824 · 38f7824 · adamnovak · Jan 12, 2024
2 parents c6b5a91 + 9e81141
commit 38f7824
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diff --git a/scripts/mcmc_Makefile b/scripts/mcmc_Makefile
@@ -85,10 +85,10 @@ clean:
 	rm -r $(TOIL_OS) 
 
 CHR21.fa:
-	wget https://courtyard.gi.ucsc.edu/~anovak/vg-data/bakeoff/CHR21.fa
+	wget https://public.gi.ucsc.edu/~anovak/vg-data/bakeoff/CHR21.fa
 
 1kg_hg19-CHR21.vcf.gz:
-	wget https://courtyard.gi.ucsc.edu/~anovak/vg-data/bakeoff/1kg_hg19-CHR21.vcf.gz
+	wget https://public.gi.ucsc.edu/~anovak/vg-data/bakeoff/1kg_hg19-CHR21.vcf.gz
 
 1kg_hg19-CHR21.vcf.gz.tbi:
-	wget https://courtyard.gi.ucsc.edu/~anovak/vg-data/bakeoff/1kg_hg19-CHR21.vcf.gz.tbi
+	wget https://public.gi.ucsc.edu/~anovak/vg-data/bakeoff/1kg_hg19-CHR21.vcf.gz.tbi
diff --git a/vgci/vgci.py b/vgci/vgci.py
@@ -54,8 +54,8 @@ def setUp(self):
         # when moving to a more inclusive reference?
         self.worse_threshold = 0.005
         # /public/groups/vg/vg-data on Courtyard is served as
-        # https://courtyard.gi.ucsc.edu/~anovak/vg-data/
-        self.vg_data = 'https://courtyard.gi.ucsc.edu/~anovak/vg-data'
+        # https://public.gi.ucsc.edu/~anovak/vg-data/
+        self.vg_data = 'https://public.gi.ucsc.edu/~anovak/vg-data'
         self.input_store = self.vg_data + '/bakeoff'
         self.vg_docker = None
         self.container = None # Use default in toil-vg, which is Docker