Add missing tests from #3063

vgteam · Oct 28, 2020 · d41f866 · d41f866 · adamnovak · Oct 28, 2020
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commit d41f866
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Showing 3 changed files with 4 additions and 2 deletions.
diff --git a/test/small/xy.dict b/test/small/xy.dict
@@ -1,2 +1,3 @@
+@HD	VN:1.5	SO:unknown
 @SQ	SN:x	LN:1001
 @SQ	SN:y	LN:1001
diff --git a/test/small/yx.dict b/test/small/yx.dict
@@ -1,2 +1,3 @@
+@HD	VN:1.5	SO:unknown
 @SQ	SN:y	LN:1001
 @SQ	SN:x	LN:1001
diff --git a/test/t/50_vg_giraffe.t b/test/t/50_vg_giraffe.t
@@ -70,8 +70,8 @@ rm -f x.vg x.gbwt x.gg x.snarls x.min x.dist x.gg x.fa x.fa.fai x.vcf.gz x.vcf.g
 cp small/xy.fa .
 cp small/xy.vcf.gz .
 cp small/xy.vcf.gz.tbi .
-vg giraffe xy.fa xy.vcf.gz -f small/x.fa_1.fastq -o SAM --ref-paths small/yx.dict | grep "@SQ" > surjected-yx.dict
-vg giraffe xy.fa xy.vcf.gz -f small/x.fa_1.fastq -o SAM --ref-paths small/xy.dict | grep "@SQ" > surjected-xy.dict
+vg giraffe xy.fa xy.vcf.gz -f small/x.fa_1.fastq -o SAM --ref-paths small/yx.dict | grep -E "^@(SQ|HD)" > surjected-yx.dict
+vg giraffe xy.fa xy.vcf.gz -f small/x.fa_1.fastq -o SAM --ref-paths small/xy.dict | grep -E "^@(SQ|HD)" > surjected-xy.dict
 
 diff surjected-yx.dict small/yx.dict
 is "${?}" "0" "surjecting with a sequence dictionary in non-sorted order produces headers in non-sorted order"