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vg 1.39.0 - Runzi
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@StephenHwang StephenHwang released this 14 Mar 22:36
· 2326 commits to master since this release
v1.39.0
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Download for Linux

Don't forget to mark the static binary executable:

chmod +x vg

Docker Image: quay.io/vgteam/vg:v1.39.0

Buildable Source Tarball: vg-v1.39.0.tar.gz

Includes source for vg and all submodules. Use this instead of Github's "Source Code" downloads; those will not build as they do not include code for bundled dependencies that the vg build process needs.

This release includes:

  • CI now uses Toil compatible with pip 22.
  • vg giraffe can now produce GAF using GFA segment name coordinates.
  • vg sim no longer annotates reads with positions along synthesized haplotype paths
  • vg sim supports --multi-position option of vg annotate, for annotating simulated reads with path positions per node.
  • vg gbwt supports --pass-paths option to use paths from a passed-in graph when computing a path cover or local haplotype cover GBWT.
  • vg sim supports simulation from a set of HSTs in a pantranscriptome from vg rna
  • vg giraffe supports annotating reads with coverage by minimizers that gave rise to correct seeds.

Updated Submodules

  • gssw
  • libvgio

Make sure to git submodule sync and git submodule update --init --recursive if building from source.

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