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v0.4.0
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@dweemx dweemx released this 23 Nov 10:54
· 2521 commits to master since this release
v0.4.0
77e716c

Summary of changes:

  • Requires Nextflow 19.10.0
  • Merge #47 + 2cefca1: Add automated testing for single_sample, single_sample_scenic, scenic and bbknn.
  • Merge branch bbknn_workflow_reporting (f1bb4e6) : Implement BBKNN workflow reporting.
  • Merge #58 (Implement #46):Implement filter based on cell metadata.
  • Merge #57 (Implement #41): Implement annotation based on cell metadata.
  • Allow multiple samples to be run with the SCENIC pipelines at once (d4d613f).
  • Allow to qsub specific steps of SCENIC (4f92cf9).
  • Add mnnCorrect batch effect correction method (ea10169, 1aaea42).
  • Update container for multi-runs SCENIC from dweemx/sctx-pyscenic version 0.9.19-4 to 0.9.19-6.
  • Organise configs within the tools folders.
  • Minor refactoring on file names.
  • Multiple bug fixes.
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