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v0.8.2
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@cflerin cflerin released this 31 Jan 13:16
· 2335 commits to master since this release
v0.8.2
dec40bd

Summary of changes:

  • Default configuration files are now loaded before loading any profile-specific configs. This allows parameters in optional profiles to overwrite those set by the default profiles.
  • Clarifications to the h5ad input profile, including setting of some default options.
  • Changes to published loom files:
    • The compressed loom file is no longer published to out/loom/ since it's not compatible with SCope.
    • The filtered loom file (for input to SCENIC) is not longer published in out/loom
    • The "final" SCope-ready output loom is now named more descriptively: from ...SC__H5AD_TO_LOOM.loom, the output file is now named: {project_name}.{sampleId}.SCope_output.loom
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