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apptainer update
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KrisDavie committed Mar 23, 2023
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Expand Up @@ -82,7 +82,7 @@ Another interesting parameter to consider adding to the configuration file is th
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**Singularity/Apptainer**:

Similar to docker, using a singularity or apptainer image does not require you to have to adapt the pipeline script. You can run with Singularity container using the following command-line parameter: `-with-singularity [singularity-image-file]` (Full Apptainer support is coming soon), where the image is downloaded from Dockerhub as well, built on runtime and then stored in a folder `singularity/`. Re-using a singularity image is possible with:
Similar to docker, using a singularity or apptainer image does not require you to have to adapt the pipeline script. You can run with Singularity container using the following command-line parameter: `-with-singularity [singularity-image-file]` (Apptainer support is also present), where the image is downloaded from Dockerhub as well, built on runtime and then stored in a folder `singularity/`. Re-using a singularity image is possible with:
```
singularity.cacheDir = "/path/to/singularity"
```
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