Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

CRAN resubmission - v0.0.1 #22

Open
wants to merge 3 commits into
base: main
Choose a base branch
from
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 1 addition & 2 deletions DESCRIPTION
Original file line number Diff line number Diff line change
@@ -1,7 +1,6 @@
Package: MetaPipe
Type: Package
Title: A High-Performance Computing Pipeline for QTL Mapping of Large Ionomic
and Metabolomic Datasets
Title: A High-Performance Computing Pipeline for QTL Mapping
Version: 0.1.0
Authors@R: c(
person(given = "Roberto",
Expand Down
1 change: 1 addition & 0 deletions R/utils-qtl.R
Original file line number Diff line number Diff line change
Expand Up @@ -100,6 +100,7 @@ transform_pseudo_marker <- function(x_data, marker, chr, pos) {
#' @param cpus Number of CPUs to be used in the computation.
#' @param plots_dir Output directory for plots.
#'
#' @return Effect plots (PNG files) for each trait-marker combination.
#' @export
#'
#' @examples
Expand Down
5 changes: 2 additions & 3 deletions R/utils.R
Original file line number Diff line number Diff line change
Expand Up @@ -163,10 +163,9 @@ rplc_na <- function(x) {
#' List files matching a pattern and delete them
#'
#' @param patterns Vector of strings with patterns to be deleted.
#' @param path Path to the directory containing the files
#' @param path Path to the directory containing the files.
#'
#' @keywords internal
#' @noRd
#' @export
tidy_up <- function(patterns, path = here::here()) {
# List files
filenames <- unlist(lapply(patterns,
Expand Down