workflow-iimi

This workflow is experimental.

An analysis workflow for detecting known OTUs (viruses) using read mapping and ML.

Steps

1. Build all-OTU index. Build a Bowtie2 mapping index that includes all sequences in the ML model bundle.
2. Map all OTUs. Map sample reads against all OTUs in the ML model bundle reference.
3. Predict. Use Iimi (pre-release) to predict viral presence based on mappings.