fix: fix failure when using paired data

virtool · Mar 15, 2024 · 3bb0429 · 3bb0429
1 parent 2f0af16
commit 3bb0429
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflow.py b/workflow.py
@@ -107,7 +107,7 @@ async def stdout_handler(line: bytes):
             "-x",
             index.bowtie_path,
             "-U",
-            *sample.read_paths,
+            ",".join(str(path) for path in sample.read_paths),
         ],
         stdout_handler=stdout_handler,
     )
@@ -201,7 +201,7 @@ async def stdout_handler(line: bytes):
             "-x",
             isolate_index_path,
             "-U",
-            *sample.read_paths,
+            ",".join(str(path) for path in sample.read_paths),
         ]
 
         await run_subprocess(command, stdout_handler=stdout_handler)