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@vivarium-collective

Vivarium Collective

home of the vivarium core engine and project ecosystem

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  1. vivarium-core vivarium-core Public

    Core Interface and Engine for Vivarium

    Python 26 3

  2. bigraph-schema bigraph-schema Public

    compositional type schemas

    Python 1 2

  3. process-bigraph process-bigraph Public

    Jupyter Notebook 2 2

  4. bigraph-viz bigraph-viz Public

    visualization tool for bigraph schema

    Jupyter Notebook 1

  5. biosimulator-processes biosimulator-processes Public

    Core implementations of simulator processes using the process-bigraph Process API

    Jupyter Notebook 1 1

Repositories

Showing 10 of 43 repositories
  • vivarium-collective.github.io Public
    vivarium-collective/vivarium-collective.github.io’s past year of commit activity
    HTML 0 0 1 0 Updated Dec 25, 2024
  • process-bigraph Public
    vivarium-collective/process-bigraph’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 2 30 1 Updated Dec 21, 2024
  • bigraph-schema Public

    compositional type schemas

    vivarium-collective/bigraph-schema’s past year of commit activity
    Python 1 Apache-2.0 2 34 0 Updated Dec 21, 2024
  • cdFBA Public

    Community Dynamic Flux Balance Analysis using process-bigraph

    vivarium-collective/cdFBA’s past year of commit activity
    Python 0 0 0 0 Updated Dec 20, 2024
  • multicell-schema Public
    vivarium-collective/multicell-schema’s past year of commit activity
    Python 1 0 0 0 Updated Dec 19, 2024
  • spatio-flux Public

    spatio-temporal fba for process-bigraphs

    vivarium-collective/spatio-flux’s past year of commit activity
    Python 1 1 1 0 Updated Dec 13, 2024
  • vivarium-core Public

    Core Interface and Engine for Vivarium

    vivarium-collective/vivarium-core’s past year of commit activity
    Python 26 Apache-2.0 3 16 (1 issue needs help) 0 Updated Dec 3, 2024
  • vivarium-simservice Public
    vivarium-collective/vivarium-simservice’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 1, 2024
  • compucell-tissueforge Public

    Process-Bigraph composition of CompuCell3D and TissueForge

    vivarium-collective/compucell-tissueforge’s past year of commit activity
    Python 0 1 0 0 Updated Nov 1, 2024
  • bigraph-viz Public

    visualization tool for bigraph schema

    vivarium-collective/bigraph-viz’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 1 0 0 Updated Oct 24, 2024
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