Skip to content
@vivarium-collective

Vivarium Collective

home of the vivarium project ecosystem

Pinned Loading

  1. vivarium-core vivarium-core Public

    Core Interface and Engine for Vivarium 1.0

    Python 29 3

  2. vivarium-interface vivarium-interface Public

    Vivarium 2.0 Interface to Process-Bigraphs

    Jupyter Notebook

  3. biosimulator-processes biosimulator-processes Public

    Core implementations of simulator processes using the process-bigraph Process API

    Jupyter Notebook 1 1

  4. process-bigraph process-bigraph Public

    process and composite simulation interfaces

    Jupyter Notebook 2 2

  5. bigraph-schema bigraph-schema Public

    compositional type schemas

    Python 1 2

  6. bigraph-viz bigraph-viz Public

    visualization tool for bigraph schema

    Jupyter Notebook 1

Repositories

Showing 10 of 46 repositories
  • vivarium-collective.github.io Public
    vivarium-collective/vivarium-collective.github.io’s past year of commit activity
    HTML 0 0 1 0 Updated Apr 13, 2025
  • multicell-schema Public
    vivarium-collective/multicell-schema’s past year of commit activity
    Jupyter Notebook 1 1 1 0 Updated Apr 11, 2025
  • vivarium-interface Public

    Vivarium 2.0 Interface to Process-Bigraphs

    vivarium-collective/vivarium-interface’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 1 2 Updated Apr 11, 2025
  • v2Ecoli Public Forked from CovertLab/vEcoli

    Whole cell model of E. coli implemented with process-bigraph (in development)

    vivarium-collective/v2Ecoli’s past year of commit activity
    Jupyter Notebook 0 MIT 6 0 1 Updated Apr 11, 2025
  • cdFBA Public

    Community Dynamic Flux Balance Analysis using process-bigraph

    vivarium-collective/cdFBA’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 11, 2025
  • spatio-flux Public

    spatio-temporal fba for process-bigraphs

    vivarium-collective/spatio-flux’s past year of commit activity
    Python 1 1 1 0 Updated Apr 8, 2025
  • process-bigraph Public

    process and composite simulation interfaces

    vivarium-collective/process-bigraph’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 2 30 0 Updated Apr 8, 2025
  • bigraph-schema Public

    compositional type schemas

    vivarium-collective/bigraph-schema’s past year of commit activity
    Python 1 Apache-2.0 2 39 0 Updated Apr 8, 2025
  • biosimulator-processes Public

    Core implementations of simulator processes using the process-bigraph Process API

    vivarium-collective/biosimulator-processes’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 1 0 0 Updated Apr 7, 2025
  • bigraph-viz Public

    visualization tool for bigraph schema

    vivarium-collective/bigraph-viz’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 1 0 0 Updated Apr 6, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…