Suppress deprecation warnings in plip

plip has not updated its code with regard to new numpy versions, and thus the explicit casting `np.uint32(i)` in line 361 of `plip.basic.supplemental` (function `int32_to_negative`) throws thousands of warnings. These are suppressed here, as the warning suppression in our `util.__init__` is not catching these, probably due to setting of the logging level at the top of this module.

teachopencadd/talktorials/T018_automated_cadd_pipeline/utils/helpers/plip.py

@@ -5,6 +5,7 @@
 from enum import Enum  # for creating enumeration classes
 from pathlib import Path  # for creating folders and handling local paths
 import logging  # for setting logging levels (to disable logging defaults of packages e.g. PLIP)
+import warnings
 
 import plip  # for changing the logging setting of the package (see bottom of the cell: Settings)
 # for calculating protein-ligand interactions
@@ -15,8 +16,8 @@
 
 # Settings:
 # disabling excessive INFO logs of the PLIP package
-logging.getLogger(plip.__name__).setLevel(logging.WARNING)
-
+logging.getLogger(plip.__name__).setLevel(logging.ERROR)
+warnings.simplefilter("ignore", category=DeprecationWarning)
 
 class Consts:
     """