release v1.0.4-beta

voutcn · Feb 16, 2016 · 01b6692 · 01b6692
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diff --git a/ChangeLog.md b/ChangeLog.md
@@ -1,3 +1,10 @@
+### 1.0.4-beta / 2016-02-16 HKT
+
+* Faster index of succinct de Bruijn graph via prefix look up
+* Add `--prune-level` 3 and `--prune-depth` options for more aggressive pruning
+* Tune `bulk` parameters
+* Support reads with length >= 65536 bp
+
 ### 1.0.3 / 2015-10-11 HKT
 
 * Hotfix of number of tip nodes in SdBG 32 bit integer overflow

diff --git a/megahit b/megahit
@@ -66,7 +66,7 @@ Optional Arguments:
     --no-mercy                              do not add mercy kmers
     --no-bubble                             do not merge bubbles
     --merge-level            <l,s>          merge complex bubbles of length <= l*kmer_size and similarity >= s [20,0.98]
-    --prune-level            <int>          strength of local low depth pruning (0-3) [2]
+    --prune-level            <int>          strength of low depth pruning (0-3) [2]
     --prune-depth            <int>          remove unitigs with avg kmer depth less than this value [auto]
     --low-local-ratio        <float>        ratio threshold to define low local coverage contigs [0.2]
     --max-tip-len            <int>          remove tips less than this value [2*k]