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added release note
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voutcn committed Nov 30, 2016
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7 changes: 7 additions & 0 deletions ChangeLog.md
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### 1.0.6 / 2016-11-30 HKT

* Added components to better handle high depth errors
* Added components to merge super bubbles
* Fine tuning k-mer sizes to support longer reads (150bp)
* In general, it produces longer contigs compared to previous versions

### 1.0.6 / 2016-06-06 HKT

* Fixed a bug that ignores edge multiplicity at all. This bug existed since v1.0.4-beta
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10 changes: 0 additions & 10 deletions README.md
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Expand Up @@ -37,16 +37,6 @@ If MEGAHIT is successfully compiled, it can be run by the following command:
`-1/-2`, `--12` and `-r` are parameters for inputting paired-end, interleaved-paired-end and single-end files. They accept files in fasta (*.fasta*, *.fa*, *.fna*) or fastq (*.fastq*, *.fq*) formats. They also supports gzip files (with *.gz* extensions) and bzip2 files (with *.bz2* extensions). Please run `./megahit -h` for detailed usage message.

##Assembly Tips
MEGAHIT `--presets` option provides five preset parameter combinations:

| Presets | Targeting applications |
|---|---|
| `meta` | General metagenome assembly, such as guts |
| `meta-sensitive` | More sensitive metagenome assembly, but slower |
| `meta-large` | Large and complex metagenome assembly, such as soil |
| `bulk` | Experimental; assembly of standard bulk sequencing with sufficient depth |
| `single-cell` | Experimental; single-cell sequence assembly |

To fine tune parameters for specific datasets, please find our suggestions on [this wiki page](https://github.com/voutcn/megahit/wiki/Assembly-Tips).

##FAQ & Reporting issues
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