This project was submitted for Bioinformatics I HW 1 at RPI in Fall 2012.
This program is intended to search a FASTA sequence of a protein or dna for a specific pattern specified in either prosite or IUPAC format respectively. It takes in a few command line arguments as follows:
./hw1.exe [sequence file] [search file] [output file]
sequence file: The file containing the FASTA formatted sequence to be analyzed search file: The file containing either the IUPAC or Prosite format search pattern output file: The file to which to save the results