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Documentation outlining the pipeline's workflow.
Please, contact Waldir M. Berbel-Filho (waldirmbf@gmail.com) should any questions arise.
- Please navigate through the individual pages for detailed information on specific analyses.
- All scripts and downstream datasets are readily available from this repository.
- Associated files for each analysis can be found here.
NOTE: The codes presented here were tailored to be used on our server, thus some level of adaptation is required to run these codes elsewhere.
- 01. Data Access
- 02. Genome Editing
- 03. Genome Indexing
- 04. Mapping of msGBS Samples
- 05. Additional Genomes Processing and Mapping
- 06. Global Depth Distribution
- 07. mtDNA phylogeny
- 08. Nuclear Genome Datasets
- 09. Phylogenetic Reconstruction
- 10. Reticulation Analysis
- 11. Introgression Analysis
- 12. Genetic structure
- 13. Patterns of allele distribution