Codes for the lettuce resequencing project in 2020
Codes for de novo genome assembly and annotation.
Codes for species tree construction.
Codes for WGS data preprocessing, read alignment. variant calling and filtering.
Codes for PCA, NJ-tree, and structure analysis.
Codes for selective sweep search, gene flow detection, effective population size estimation, and introgression scan.
Codes for genome-wide association analysis.