correct a bug for integrate module

wbaopaul · Feb 15, 2022 · b951aa5 · b951aa5
1 parent 2a39f81
commit b951aa5
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/integrate_peak.sh b/scripts/integrate_peak.sh
@@ -47,7 +47,7 @@ do
     frag0_dir=`cd "$pk0_dir"; cd "../../summary"; pwd`       
     mat0_dir=`cd "$pk0_dir"; cd "../../filtered_matrix"; pwd`       
     #frag0_file=$(find $frag0_dir -name "*fragments.tsv.gz")
-    frag0_file=$(find $frag0_dir -name "*fragments*" | grep -v "\.len")
+    frag0_file=$(find $frag0_dir -name "*fragments*" | grep -v "\.len" | grep -v tbi)
     mat0_dir=${mat0_dir}/${PEAK_CALLER}/${CELL_CALLER}
     #bc0_file=$(find ${mat0_dir} -name "*barcodes.txt")
     bc0_file=${mat0_dir}/barcodes_doubletsRemoved.txt