scATAC-pro_v1.3.0

• qc_per_barcode: add tss enrichment score per cell into the QC metrics
• call_cell: enable filtering barcodes with minimal tss enrichment score cutoff (parameter min_tss_escore in the updated configure_user.txt file)
• fragments file indexed by tabix (named fragments.tsv.gz)
• footprint module: suppoort comparison of any two sets of cell clusters
• motif_analysis and runDA: enable seurat/matrix object in .rds format as input
• integrate: rename cell name for each sample to avoid shared barcodes among samples; enable a distance parameter to merge peaks
• integrate_mtx: new module added, as an alias of previous integrate_seu module